 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc02g065150.1.1 |
| Common Name | LOC101261486 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
LBD |
| Protein Properties |
Length: 292aa MW: 32865.9 Da PI: 6.7309 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g065150.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 137 | 7e-43 | 7 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrrkC+++Cv+apyfp +qp+kf+nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++
Solyc02g065150.1.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPRKFENVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQ 97
7****************************************************************************************** PP
DUF260 92 aelallke 99
+l +k+
Solyc02g065150.1.1 98 DDLLNAKK 105
*9987776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009954 | Biological Process | proximal/distal pattern formation |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0048441 | Biological Process | petal development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPRKFENVH KVFGASNVAK LLNELNATQR 60
EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQDDL LNAKKDLATY IGPQAMLPML 120
QHSGYIQQHP NNPSSSNMMA YNMQPMGLQT GMQQHGAQLM MRDPQQQQQQ HQVIEAHQLA 180
AVMAAREQEM MRTYEQPQQQ QFNSGYDSAG PVTATGFHQM SSSMSPSLAL ASFDNDPYQI 240
QQAQQEQHHG QVQVQPHQLL QQQQQLPQQP QTPQQQQRAN SEEERSIGPS C*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232777 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0035P05, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Kim M,Kim MJ,Pandey S,Kim J
Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
Plant Cell Physiol., 2016. 57(11): p. 2291-2299
[PMID:27519310] - Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
Plant Mol. Biol., 2016. 92(6): p. 661-674
[PMID:27605094]
|
