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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g063520.2.1 |
| Common Name | LOC101249144 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
HD-ZIP |
| Protein Properties |
Length: 253aa MW: 28078.6 Da PI: 8.3397 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g063520.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.1 | 1.3e-17 | 113 | 167 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+k+ ++tk q Lee F+++++++ ++++ LA+kl++ rqV vWFqNrRa+ k
Solyc02g063520.2.1 113 KKKLRLTKVQSALLEESFKQQSTLNLKQKQNLARKLNVRPRQVEVWFQNRRARTK 167
677899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 110.5 | 1.2e-35 | 113 | 201 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl+k q++lLEesF+++++L+ ++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l++en++L ke +eL+ +
Solyc02g063520.2.1 113 KKKLRLTKVQSALLEESFKQQSTLNLKQKQNLARKLNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKYCETLTDENKKLYKELQELK-A 201
59*************************************************************************************9.4 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MESIYDSAGL DLGLGYSSTV NQTSRKDGQV AAVKSDLGFE PSLNLSLSSG DHQMVDLKTE 60
NKDQLSVASS YSNGSVKRER DIGSEVTEVE RVISCRVSHD EDYYEDDDAS NGKKKLRLTK 120
VQSALLEESF KQQSTLNLKQ KQNLARKLNV RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK 180
YCETLTDENK KLYKELQELK ALKVGQPLYM KLPAAATLTV CPSCERVGAG AAQNSAKPPH 240
LYGSFTNPSA AC*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 161 | 169 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215434 | 1e-148 | Solanum lycopersicum chromosome 2 clone C02HBa0284G15, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
Elife, 2017.
[PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239]
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