PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g063010.2.1
Common NameLOC101260897
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BES1
Protein Properties Length: 320aa    MW: 34474.9 Da    PI: 9.7295
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g063010.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822211.42.3e-6591531149
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         g+sgr ptwkErEnnkrRERrRRaiaaki++GLR qGn+klpk++DnneVlkALc eAGw+vedDGttyrkg +p+   e +  s ++s +
  Solyc02g063010.2.1   9 GSSGRLPTWKERENNKRRERRRRAIAAKIFTGLRTQGNFKLPKHCDNNEVLKALCIEAGWIVEDDGTTYRKGHRPP-PIENGCVSMNISAS 98 
                         689*************************************************************************.999999******** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                         ss+q s+ ss+++spv+sy+asp+sssfpsps+ d ++++    +lp+l++l++++s+
  Solyc02g063010.2.1  99 SSIQPSPMSSSFPSPVPSYHASPTSSSFPSPSRCDGNPSS---YILPFLHNLASIPST 153
                         *************************************985...999***999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.7E-6110134IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTAGTGGGGS SGRLPTWKER ENNKRRERRR RAIAAKIFTG LRTQGNFKLP KHCDNNEVLK  60
ALCIEAGWIV EDDGTTYRKG HRPPPIENGC VSMNISASSS IQPSPMSSSF PSPVPSYHAS  120
PTSSSFPSPS RCDGNPSSYI LPFLHNLASI PSTLPPLRIS NSAPVTPPLS SPTRRSKPPK  180
PLWESLSRVP LNSFQHPLFA ASAPSSPTRR RYSKPATIPE CDESDAASVE SARWVSFQTV  240
AAPTSPTFNL VKPLPQQNIL LDALSGHGMV GWGETAAQKG HGAEFDFESC KVKAWEGERI  300
HEVAVDDLEL TLGSAKARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.165750.0fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g063010.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135920.0Lycopersicon esculentum clone 132355R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233505.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-103BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A3Q7EYU00.0A0A3Q7EYU0_SOLLC; Uncharacterized protein
STRINGSolyc02g063010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94862128
Representative plantOGRP37191024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.61e-75BES1 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]