PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 206aa MW: 24131.2 Da PI: 6.5242

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g062960.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.7e-20	48	100	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Solyc02g062960.2.1 48 KRKLSDEQVNLLEQSFEHEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 100 45899***********************************************9 PP
2	HD-ZIP_I/II	119.7	1.5e-38	47	137	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv+lLE+sFe+e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ +++rLe+ev +L+e++ Solyc02g062960.2.1 47 RKRKLSDEQVNLLEQSFEHEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKNEHETNIVDKCRLENEVLKLKEQMC 137 8**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.151	42	102	IPR001356	Homeobox domain
SMART	SM00389	2.3E-20	45	106	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.3E-18	48	111	IPR009057	Homeodomain-like
Pfam	PF00046	2.5E-17	48	100	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.7E-21	49	109	IPR009057	Homeodomain-like
CDD	cd00086	1.91E-17	51	103	No hit	No description
PRINTS	PR00031	1.3E-5	73	82	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	82	98	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MNNDDQMLHI SQYYSGIYTQ QGEGKARRRR KKNKGDDVNG AMMMMMRKRK LSDEQVNLLE 60 QSFEHEHKLE SERKDRLASE LGLDPRQVAV WFQNRRARWK SKKLEEEYSK LKNEHETNIV 120 DKCRLENEVL KLKEQMCEAE KEIQRLLTER SDGVSINSPT TSSLSMEAAM DPPFLGEFGF 180 DNSFYGPGHD GMEWVNNLYN MPYHM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	49	RKKNKGDDVNGAMMMMMRKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g062960.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233508.1	1e-153	homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	8e-69	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	M0ZZL2	1e-129	M0ZZL2_SOLTU; Uncharacterized protein
STRING	Solyc02g062960.2.1	1e-153	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80
Representative plant	OGRP3776	10	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	7e-57	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Solyc02g062960.2.1
Entrez Gene	101261778

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]