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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g062400.2.1 |
| Common Name | LOC101251254 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
SRS |
| Protein Properties |
Length: 352aa MW: 38501.1 Da PI: 7.7235 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g062400.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 222.5 | 8.8e-69 | 124 | 274 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92
g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ ++ +++++k+kr+ + ++s+l st+l+
Solyc02g062400.2.1 124 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQGHNnNNNNHKNKRQREDPSASSLVSTRLP 214
5789****************************************************99888776625555566666666777888888888 PP
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s++ + le+ ++P++v+++avf+c+++ss++d+e++laYq+avsigGhvfkGiLydqG e+
Solyc02g062400.2.1 215 SNT--NGLEVGKFPSKVRTSAVFQCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHES 274
876..5699999***********************************************987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MANFFSLGGN QEQQHQEISS SQALVPTESN NWFLYRNEHH HHHHNQEIPN TYKGFELWQS 60
GNTPQHQHQH HQQQQQFRHP IYPLQDLYST DVGLGVGPSR SGFDISAGDH EASRSGFVMM 120
RSGGGGISCQ DCGNQAKKDC QHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLAAL 180
QQQQQGHNNN NNNHKNKRQR EDPSASSLVS TRLPSNTNGL EVGKFPSKVR TSAVFQCIQM 240
SSIEDDEDQL AYQAAVSIGG HVFKGILYDQ GHESQYNNMV AAGGDTSSGG SAGGVQHHHH 300
NSAAVATATT TSGGDATAAG PSNFLDPSLF PAPLSTFMVA GTQFFPPSRS P*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 1e-58 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Tomato Genome Consortium
The tomato genome sequence provides insights into fleshy fruit evolution.
Nature, 2012. 485(7400): p. 635-41
[PMID:22660326] - Spyropoulou EA,Haring MA,Schuurink RC
Expression of Terpenoids 1, a glandular trichome-specific transcription factor from tomato that activates the terpene synthase 5 promoter.
Plant Mol. Biol., 2014. 84(3): p. 345-57
[PMID:24142382] - Spyropoulou EA,Haring MA,Schuurink RC
RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
BMC Genomics, 2014. 15: p. 402
[PMID:24884371]
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