PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GATA

Protein Properties

Length: 290aa MW: 32109.2 Da PI: 7.0524

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g062380.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.5	9.1e-19	213	247	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTplWR gp g+ktLCnaCG+++++ +l Solyc02g062380.1.1 213 CSHCGVQKTPLWRTGPLGEKTLCNACGVRFKSGRL 247 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	6.3E-71	21	286	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	3.4E-15	207	257	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.308	210	243	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.8E-15	211	245	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.25E-16	212	262	No hit	No description
SuperFamily	SSF57716	2.19E-14	212	270	No hit	No description
PROSITE pattern	PS00344	0	213	238	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.8E-16	213	247	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MKFYPHVVYM VPVCYVFGQV TQQIFKQKMD YSGNCQSFVS GDDLFVDELL DLSNGFSEDE 60 ENENENNNSS SSQQIKECDK ETVIIPSGKQ DFGSLLGCEI SLPGADLDNL EWLSHFVEDS 120 FSEYSLTYSA GNLPGKSLKL HSNVEIPVRE KPCFTAPLGA EREKNKPPSM SFSSSSSTTA 180 NSFWGELSVE NKPAARKPKK KMEKRIGIGA KQCSHCGVQK TPLWRTGPLG EKTLCNACGV 240 RFKSGRLLPE YRPASSPTFS TGLHSNSHRK VLEMRQKKET EPGPPVQSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24714	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g062380.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233547.1	0.0	GATA transcription factor 5
Refseq	XP_010317231.1	0.0	GATA transcription factor 5
Swissprot	Q9FH57	5e-51	GATA5_ARATH; GATA transcription factor 5
TrEMBL	A0A3Q7EYN4	0.0	A0A3Q7EYN4_SOLLC; GATA transcription factor
STRING	Solyc02g062380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1154	24	81
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	7e-52	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Solyc02g062380.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]