PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062070.1.1
Common NameLOC104646073
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 306aa    MW: 34519.9 Da    PI: 4.8295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.22.6e-09168060128
                 NAM  60 fFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          F++ ++k+++gk+ nr  +   g Wk   ++++v++kkg  +g kkt+ f   ++    +  W+m+eyrl
  Solyc02g062070.1.1  16 NFVTVKEKKRNGKNFNRgiVGGGGSWKGVNNSRPVYNKKGLMIGFKKTFRFD--EN----NHVWFMKEYRL 80 
                         5888889999*******74445899**************************7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.3491107IPR003441NAC domain
SuperFamilySSF1019411.44E-1217107IPR003441NAC domain
PfamPF023658.7E-52980IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGMNFDDEGL LNYLINFVTV KEKKRNGKNF NRGIVGGGGS WKGVNNSRPV YNKKGLMIGF  60
KKTFRFDENN HVWFMKEYRL CDKLLEDLRL HGKIRYEDYV LCSIRMKVNW GHFRQNLLAS  120
SSSQCQETVK SSAANVIPSD QLNSTLNGNI RPVTLVFKES NVTQWPATIQ EECFVPVIHQ  180
EIPSVSFGAI EEDCSVPVVH PETHSVSFAA TEEECSVPVV HQEIPSVSFV AKESNVSASK  240
EVEECSVPVE TRPDNDIATY HKELDAYAAS ILETMVPYIP EVQEDEDDIP LFSEDFYIGH  300
TNLWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317372.10.0uncharacterized protein LOC104646073
TrEMBLK4B6970.0K4B697_SOLLC; Uncharacterized protein
STRINGSolyc02g062070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]