PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g061900.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 305aa    MW: 34602.8 Da    PI: 5.0922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g061900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.21.4e-14711711127
                 NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkge 98 
                         dee + +yL k v+g  +e+ + i+ vd+y   +P++L ++  +++++ + F++ +kk+ +gk+ nr  +   g Wk   + k+v+++kg 
  Solyc02g061900.1.1   7 DEEQLLRYLLKFVTGMLVEC-DQIRFVDLYGKeKPSQLFET--TTTDRHHVFTQLKKKKGNGKNFNRgiVGGGGSWKGIDNGKPVYNQKGL 94 
                         777778***********999.88******97648****633..23457899****************74445899**************** PP

                 NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                         ++g kkt+ f   ++    +  W+m+eyr
  Solyc02g061900.1.1  95 KIGFKKTFRFD--EE----NHVWIMKEYR 117
                         **********7..22....458******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.8971146IPR003441NAC domain
SuperFamilySSF1019415.1E-177144IPR003441NAC domain
PfamPF023651.2E-68117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGMMNFDEEQ LLRYLLKFVT GMLVECDQIR FVDLYGKEKP SQLFETTTTD RHHVFTQLKK  60
KKGNGKNFNR GIVGGGGSWK GIDNGKPVYN QKGLKIGFKK TFRFDEENHV WIMKEYRPSD  120
NILKALRLRG QIRHEEEFAV CSITRSVYSS KVIIPSDNNV ENFIDSVLIS SSQCQEAQNQ  180
FQELGQSFAQ YQFQDLEQLS STNGIPSDGS NSILNGNVGP VTLVFKESNV SAAKEDECSV  240
HQQTPSVECS VYDIATYHKE LDAYAAFQLK SMVPNIPQQQ EDDEPDSIPL FHEDFNIDYT  300
HLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g061900.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-168PREDICTED: uncharacterized protein LOC107057785
TrEMBLA0A3Q7FJ660.0A0A3Q7FJ66_SOLLC; Uncharacterized protein
STRINGSolyc02g061900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]