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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g037530.2.1 | ||||||||
Common Name | LOC100301945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 843aa MW: 94276.8 Da PI: 6.3978 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.7e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ + + ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Solyc02g037530.2.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 215 99*****************************7444..44459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Solyc02g037530.2.1 216 -WNEKNQLLLGIRRA 229 .8889999***9986 PP | |||||||
2 | Auxin_resp | 115.8 | 3.7e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k Solyc02g037530.2.1 254 AAHAAATNSCFNVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-21 | 127 | 228 | No hit | No description |
Pfam | PF02362 | 2.6E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.055 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.05E-6 | 714 | 790 | No hit | No description |
PROSITE profile | PS51745 | 20.781 | 716 | 800 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MKLSTSGMGQ QAHEGGEKKC LNSELWHACA GPLVCLPTVG SRVVYFPQGH SEQVAATTNK 60 EVDAHIPNYP NLSPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TYLPVEFGIP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QTPPAQELIA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAV RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSCFNVFFNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI GDLDPVRWAN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSLF PLRLKRPFYQ GTSSYQDSNN EAINRMSWLR GNAGELGHHS MNLQSFGMLP 420 WMQQRVDSTI LPNDINQHYQ AMLATGLQSF GSGDLLKQQL MQFQQPVQYL QHASTENSIL 480 HQQQQQQQQI MQQAVHQHML PAQTQMLSEN LQRQSQHQSN NQSEEQAHQH TYQEAFQLPH 540 DQLQQRQPSN VTSPFLKADF ADLTSKFSAS VAPSGVQNML GSLCSEGSNN SLNINRTGQS 600 VIIEQSPQQS WMSKFTESQL NTCSNSSSLP TYGKDTSNPR GNCSLDSQNQ ALFGANIDSS 660 GHLLPTTVSN VTTTCADMSL MPLGASGYQN SLYGYVQDSS ELLHNAGQID PPNATHTFVK 720 VYKSGCVGRS LDITQFHSYH ELRRELGQMF GIEGFLEDPQ RSGWQLVFVD RENDILLLGD 780 DPWEAFVNNV WYIKILSPED VQKLGKEEAE SLNRGAVERM SSTNADDRDL ISGMPSLGSL 840 EY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 15 | 358 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.602 | 0.0 | callus| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g037530.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF667342 | 0.0 | Solanum lycopersicum auxin response factor 8 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231633.1 | 0.0 | auxin response factor 8 isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A3Q7EY57 | 0.0 | A0A3Q7EY57_SOLLC; Auxin response factor | ||||
STRING | Solyc02g037530.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 | Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g037530.2.1 |
Entrez Gene | 100301945 |