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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g036370.2.1 | ||||||||
Common Name | LOC101261079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 465aa MW: 50960.9 Da PI: 6.7145 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 1.9e-16 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Solyc02g036370.2.1 57 RERWSEEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 101 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-16 | 51 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.204 | 52 | 106 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-15 | 55 | 104 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.5E-13 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 57 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-9 | 57 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.00E-10 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MTIGDQSESD SILPCRNRMS VDVGAPSPRS IQMDEQVNPG EEYAPKIRKP YTISKQRERW 60 SEEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESS NGDASSVKSI 120 EIPPPRPKRK PMHPYPRKMA TPLKSGTLAS EKLNRSGSPD LCLSEPENQS PTSVLSTLGS 180 DAFGTVDSTK PSEQSSPVSS AVAENSGDLV LSEPFDLVVE ESRSSPARAY ATSNPANQAC 240 VKLELFPEDN DFVKEGSDEA SSTQCLKLFG KTVLVTDAHM PPTDETLTRS SFPAKYLPWD 300 SECPQSTFSI VPPTPSYYFT TPNGSSGPNQ SGVATTHLPW GSSCAVPCTQ VHSPIPMKGR 360 PLFNDRYLEG KETQKEGSST GSNAESVDAE LSGEKNMEIE AQSSRNVVEE SVRASVPSLF 420 ERRANSTKRV KGFVPYKRCL AERGVSSSTL TGEEREEQRT RLCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2886 | 0.0 | callus| flower| fruit| leaf| root| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g036370.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246695 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-40g4 map 2, complete sequence | |||
GenBank | AC246718 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 2 clone sle-5e16 map 2, complete sequence | |||
GenBank | AC246729 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-36d16 map 2, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231624.1 | 0.0 | protein REVEILLE 1 | ||||
TrEMBL | A0A3Q7EXN4 | 0.0 | A0A3Q7EXN4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g036370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3185 | 24 | 47 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 4e-70 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g036370.2.1 |
Entrez Gene | 101261079 |
Publications ? help Back to Top | |||
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