PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g032180.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 288aa MW: 31669.5 Da PI: 5.0201

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g032180.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	39.2	1.7e-12	152	199	2	51
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseas 51 +eqd+++P nv+rim+ + P + is+d k+t+ +c+sefi fvt e++ Solyc02g032180.1.1 152 QEQDQVIP--NVARIMHSTHPPHIMISDDVKQTMYHCISEFICFVTYETN 199 57888877..************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.74E-6	134	199	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.6E-9	151	199	IPR009072	Histone-fold
Pfam	PF00808	3.9E-7	160	199	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEALDHFSKV TALMADLDKS NIFIAGVGEA VKQNIRLTTG FSVGTHPIKY LGLPLTSKNV 60 ANGTLLQSGN SCGKLLSKKH IPYKESFERE VYLYRQSEMD NGNHVGGSGN GGFHSYHRSP 120 QPTSVDPPSL DMEMSLELPA HLNQEVVEII IQEQDQVIPN VARIMHSTHP PHIMISDDVK 180 QTMYHCISEF ICFVTYETNA FEDDGGECRS HTRESLLKRP MVDTASSSNI TPYNLPPIFP 240 MAHDHFFFSP PMGNGDIQGD APNGSTSQCA VASMDSDVES PKEEDKE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g032180.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC204082	9e-79	Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075904.1	1e-105	nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A3Q7EYU2	1e-108	A0A3Q7EYU2_SOLLC; Uncharacterized protein
STRING	Solyc02g032180.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA26693	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	3e-09	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Solyc02g032180.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]