PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g021330.1.1 | ||||||||
Common Name | LOC101245009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 154aa MW: 17528.9 Da PI: 4.6735 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 107.9 | 6e-34 | 33 | 132 | 1 | 96 |
NF-YC 1 qlksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie++++fk nh lP ikk++k+ded +mi+ae+Pvll+k+celfi eltlrswl+a+e++++ lkk d+++++ +td Solyc02g021330.1.1 33 QLEMFWTNQrreIENDNEFKnNHLLPPNLIKKLMKTDEDDQMIAAESPVLLAKTCELFIQELTLRSWLNAQEKHQHILKKDDVTDVIIQTD 123 799*****99999*******77889****************************************************************** PP NF-YC 88 ifdflvdiv 96 dfl+ +v Solyc02g021330.1.1 124 NLDFLLVVV 132 *****8666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.0E-20 | 44 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.7E-14 | 57 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.4E-22 | 57 | 133 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MKNNFDKLVV NATQSSTHPT LAQLNIVKNK QEQLEMFWTN QRREIENDNE FKNNHLLPPN 60 LIKKLMKTDE DDQMIAAESP VLLAKTCELF IQELTLRSWL NAQEKHQHIL KKDDVTDVII 120 QTDNLDFLLV VVDDAIDGST PSIVPFYIAG GNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-25 | 40 | 132 | 2 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g021330.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231647.1 | 1e-109 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 2e-32 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A3Q7FGJ4 | 1e-108 | A0A3Q7FGJ4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g021330.1.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 6e-32 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g021330.1.1 |
Entrez Gene | 101245009 |