PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 842aa MW: 93298.5 Da PI: 7.5675

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g112190.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.3e-29	542	592	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Solyc01g112190.2.1 542 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 592 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	531	612	IPR003035	RWP-RK domain
Pfam	PF02042	9.7E-25	545	592	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.93E-21	743	829	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-20	745	826	No hit	No description
SMART	SM00666	5.6E-23	746	829	IPR000270	PB1 domain
PROSITE profile	PS51745	21.927	746	829	IPR000270	PB1 domain
Pfam	PF00564	2.2E-16	747	828	IPR000270	PB1 domain
CDD	cd06407	3.06E-40	747	828	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MEDAAFTLLA KLHDDNNATD FTEFGFWLEA TDQPSNSNSN YCTSNQMDSA PPTQSRRKLW 60 IGPNNPNPTS SIPPVNTRLV QAIEYLKNST THNKEVLIQI WVPVNRGGKH VLITNNQPYF 120 LNPNSHSLLQ YRNVSQNYQF AADKDSNELV GLPGRVFLKK LPEWTPDVRF FKSEEYPRVN 180 YAHQHNVRGS IAVPVFETGS GTCLGVVEIV TTIQKTHYHL ELEHVCKALE AVNLRSSGIS 240 SNPSKIKDQD CNESYLAALA EIQYILTCVC DTHKLPLAQT WAPCIQQGKG GCLQSDENFA 300 SCVSTVDSSC YVRDQHVVPF HLACSEHHLL KGEGVAGGAF NTNQPCFATD ITAFSKAEYP 360 LSHHARMFGL CSAVAIRLRS IYTGSADFVL EFFLPLDCKN TEEQKIMLSS LSSVIQQSCR 420 SLRVVTDQEL QEEKEVVRLP IGEEESRKPV SSSYRDQDAS SWLSEMLDAQ RKGKGAAAVS 480 ENFKVTATPW DYTQRESIHA STFSEPNQTF EPKGGSFDFS SGTGSHSSGA KRAGERRRSK 540 TEKSISLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLQKLQ 600 LVIDSVHGAE GAIKLSSFYT NFPELNSPNN PGTSNFSASK NDDHLQQVNT QPDGSPVTTT 660 SKSTSSSGSH NSSSSLFCST GSKNCTTEEN PGGMPKRAHT ETGLHDMGQE ETKLLVRSQS 720 QKIQSNHNSV EPVCPLSTSS NQVLGRFKVK AIFGKEKIRF SLQSHWGFRD VKHEVMRRFN 780 VEDVGKIDLK YLDDDDEWVL LTCDADLEEC IDIHKFSKRR TIKVSLHHTN LGSSFGSSGP 840 A*

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MEDAAFTLLA KLHDDNNATD FTEFGFWLEA TDQPSNSNSN YCTSNQMDSA PPTQSRRKLW  60
IGPNNPNPTS SIPPVNTRLV QAIEYLKNST THNKEVLIQI WVPVNRGGKH VLITNNQPYF  120
LNPNSHSLLQ YRNVSQNYQF AADKDSNELV GLPGRVFLKK LPEWTPDVRF FKSEEYPRVN  180
YAHQHNVRGS IAVPVFETGS GTCLGVVEIV TTIQKTHYHL ELEHVCKALE AVNLRSSGIS  240
SNPSKIKDQD CNESYLAALA EIQYILTCVC DTHKLPLAQT WAPCIQQGKG GCLQSDENFA  300
SCVSTVDSSC YVRDQHVVPF HLACSEHHLL KGEGVAGGAF NTNQPCFATD ITAFSKAEYP  360
LSHHARMFGL CSAVAIRLRS IYTGSADFVL EFFLPLDCKN TEEQKIMLSS LSSVIQQSCR  420
SLRVVTDQEL QEEKEVVRLP IGEEESRKPV SSSYRDQDAS SWLSEMLDAQ RKGKGAAAVS  480
ENFKVTATPW DYTQRESIHA STFSEPNQTF EPKGGSFDFS SGTGSHSSGA KRAGERRRSK  540
TEKSISLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLQKLQ  600
LVIDSVHGAE GAIKLSSFYT NFPELNSPNN PGTSNFSASK NDDHLQQVNT QPDGSPVTTT  660
SKSTSSSGSH NSSSSLFCST GSKNCTTEEN PGGMPKRAHT ETGLHDMGQE ETKLLVRSQS  720
QKIQSNHNSV EPVCPLSTSS NQVLGRFKVK AIFGKEKIRF SLQSHWGFRD VKHEVMRRFN  780
VEDVGKIDLK YLDDDDEWVL LTCDADLEEC IDIHKFSKRR TIKVSLHHTN LGSSFGSSGP  840
A*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g112190.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240198	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-219g5 map 1, complete sequence
GenBank	AC246586	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-20o20 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231096.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A3Q7EUL6	0.0	A0A3Q7EUL6_SOLLC; Uncharacterized protein
STRING	Solyc01g112190.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Solyc01g112190.2.1
Entrez Gene	101256430

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]