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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g111500.2.1 |
Common Name | LOC101263944 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 253aa MW: 28613.4 Da PI: 8.6959 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g111500.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl
Solyc01g111500.2.1 14 KGAWTKEEDERLISYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 60.2 | 4.5e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
Solyc01g111500.2.1 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDERLISYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPTTHRPVN EPGTTQKVTT ISFAGGDHKT KDIEEDHNKM INVKAESGLS QLEDEIISSS 180 PFREQCPDLN LELRISPPSL QNYQHSPSRC FACSLGIQNS KDCNCSKNNI ASYNFLGLKS 240 NGVLDYRTLE TK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]
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