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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g111130.2.1 | ||||||||
Common Name | LOC101258704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 37201.4 Da PI: 6.729 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.7e-10 | 57 | 106 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL + l ++ +K++Ka+iL +v+ +k+L Solyc01g111130.2.1 57 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQILKDL 106 5677889********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 56 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.262 | 56 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-8 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-12 | 57 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-7 | 57 | 111 | No hit | No description |
SMART | SM00353 | 4.6E-7 | 62 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDQFNHGGLY QSNQLPNHCL TELNQLPSDV STPPNGLLSE SSKQKPEAEL KDSIAARKVQ 60 KADREKLRRD RLNEQFMELG KTLDPDRPKN DKASILSDTV QILKDLTAQV SRLKSEYAAL 120 TDESRELTQE KNDLREEKAS LKSDIESLNA QYQQRMRTMY PWAGMDHSMV MHPPSYPYPM 180 PVPIPTGPVP MHPPLQPYPF FGNHNPAVVP NPSSFVQYMT PNTLIEQQPT QYMSPIIQPG 240 SMTRQESRNK SSDQGESRIE KSEDSNEVAT DLELKTPGST SEQDLSSGQK KSRKLPRKDN 300 SFTDGSSSSK CSSSHSVHAV SSNSVVRGTK TGD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.19170 | 0.0 | callus| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g111130.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240854 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence | |||
GenBank | AC240859 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230930.1 | 0.0 | transcription factor bHLH121 isoform X2 | ||||
Swissprot | Q9LT23 | 8e-88 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A3Q7EUG3 | 0.0 | A0A3Q7EUG3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g111130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5456 | 24 | 34 | Representative plant | OGRP3401 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.2 | 7e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g111130.2.1 |
Entrez Gene | 101258704 |
Publications ? help Back to Top | |||
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