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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g110490.2.1 |
Common Name | LOC101268622 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 703aa MW: 77361.6 Da PI: 7.2007 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g110490.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 117 | 140 | 6 | 26 |
-SGGGGTS...--TTTTT-SS-SS CS
zf-CCCH 6 CrffartG...tCkyGdrCkFaHg 26
C+ a++ C+yGd+C+F+H+
Solyc01g110490.2.1 117 CPVVAKSRkvsACSYGDKCRFSHD 140
666666666668***********7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002943 | Biological Process | tRNA dihydrouridine synthesis |
GO:0055114 | Biological Process | oxidation-reduction process |
GO:0005829 | Cellular Component | cytosol |
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity |
GO:0046872 | Molecular Function | metal ion binding |
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
Protein Sequence Length: 703 aa
Download sequence Send
to blast |
METETLVDEL PVATATAVAQ PETPLQPTSS NAADGGVSEE FLTPEELVAK SKAPVKREYL 60 RPPPSRPSTN NNNNTTVGVE NDDAAEAKRA PLLKDKKSKR QIKRERREEQ KSPLHLCPVV 120 AKSRKVSACS YGDKCRFSHD VEAFKAVKPA DIEGSCPFLD YEGPCPYGLA CRFAGTHRDN 180 VSAPSENLPG KSSELNFFSK DTQKLLWKNK MKFPKAEATL KLLGLKGNPK DKTLADNVEN 240 GQVTPKEPAT DTKTDSNVVA NDSVSPSISP EDDVDGNNLA DDARPLKKAK SSVSEICPSQ 300 VSSGLSVQGG VPDDNFGVNK SEPTADTMTD SDKSLKLHPR EKKLIDFRDK LYLAPLTTVG 360 NLPFRRVCKV LGADVTCGEM AMCTNLLQGQ AAEWALLRRH SSENLFGVQI CGAFPDTITK 420 TVELIEQECS VDFIDINMGC PIDVVVNKGA GSALLTKPMR MKSVVEAASS TVSTPVTIKV 480 RTAYFEGKNR IDSLIADMGS WGATAVTIHG RSRQQRYSKP ADWDYVYQCA RKAPKSLQVL 540 GNGDVFSYVD WNNHKIECPE LSTCMIARGA LVKPWIFTEI KEQRHWDITS GERLDILKDY 600 ARFGLQHWGS DSKGVDTTRH FLLEWLSYTC RYIPVGLLDI IPQKINWRSP SYYGRDELET 660 LMASDSAADW VRISELVLGK VPSGYSFAPK HKSNAYDRAE NG*
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Functional Description ? help
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Source |
Description |
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC239447 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-128j14 map 1, complete sequence |
Publications
? help Back to Top |
- Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Zeng L, et al.
Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Nat Commun, 2014. 5: p. 4956 [PMID:25249442]
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