PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GATA

Protein Properties

Length: 326aa MW: 35912.3 Da PI: 6.5106

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g110310.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.2	5.5e-19	243	276	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR gp g+ktLCnaCG++y++ + Solyc01g110310.2.1 243 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 276 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	8.8E-83	5	321	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.308	237	273	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.7E-14	237	287	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.55E-15	239	300	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.4E-14	240	274	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.08E-13	242	299	No hit	No description
Pfam	PF00320	1.0E-16	243	276	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	243	268	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MELIEARALK SSFLSDMAMK NTQQVFLDDI WCVTGINNGA SEDFSVDDLL DFSDKDFKDP 60 ELHEDDEKTS FSGSSQKRNS QDSTFSGMES FGSLAGELPI PVDDMENLEW LSQFVDDTPS 120 EFSLLCPTES FKDKTGGFTE SRSEPVVRPV VKKTRVPCFP LPFPVKPRSK RSRQAGRTWS 180 FPSSAVSGDS SSPTSSSYGS SPFPSGFFTN PVYDGDLFCS VEKPPLKKPK KNPSVETGSG 240 RRCTHCQVQK TPQWRAGPLG PKTLCNACGV RYKSGRLFPE YRPACSPTFS LEVHSNSHRK 300 VLEMRRKKET GEGIDSGLAS MISTC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12547	0.0	callus\| cell culture\| floral bud\| flower\| fruit\| leaf\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g110310.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230938.1	0.0	GATA transcription factor 5
TrEMBL	A0A3Q7ETJ3	0.0	A0A3Q7ETJ3_SOLLC; GATA transcription factor
STRING	Solyc01g110310.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1154	24	81
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60530.1	5e-44	GATA transcription factor 4

Link Out ? help Back to Top
Phytozome	Solyc01g110310.2.1
Entrez Gene	101260878

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]