PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g109240.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 122aa MW: 14015.2 Da PI: 8.2656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g109240.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.9e-39	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrrkC+++C++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d+++sl+yeA +r+++PvyG+vg+i+ l++++ +++ Solyc01g109240.1.1 5 RCAACKQLRRKCPSNCIFLPYFPPNNPQRFLYVHRIYGASNVGKMLQQVEEHQRGDVADSLYYEAYCRIKNPVYGCVGIITVLHEEIYHVQ 95 6**************************************************************************************** PP DUF260 92 aelallkeel 101 +la++++++ Solyc01g109240.1.1 96 CQLAKVQAQI 105 ****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.292	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MSSTRCAACK QLRRKCPSNC IFLPYFPPNN PQRFLYVHRI YGASNVGKML QQVEEHQRGD 60 VADSLYYEAY CRIKNPVYGC VGIITVLHEE IYHVQCQLAK VQAQIDLLYQ NGLYTLDPSF 120 Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	2	105	8	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	2	105	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g109240.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582044.1	5e-77	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	7e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1U8HND5	1e-75	A0A1U8HND5_CAPAN; LOB domain-containing protein 24-like
STRING	Solyc01g109240.1.1	5e-86	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-45	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Solyc01g109240.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]