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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g108940.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 373aa MW: 43605 Da PI: 6.6047 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g108940.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 43.1 | 7.6e-14 | 8 | 93 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT.--TT-EEEEEE-SSSEE..EE CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang.LkegDfvvFkldgrsefelvv 94
++ + ++ +r+ +p ++a ++ +gk ++ + ++d+ ++ W + + +k g+ ++++GWk+F ++n+ L+ gDf++F +dg+++f ++v
Solyc01g108940.1.1 8 IF--NPESSAKRMKIPSSYA-TYkNGK--LPRNVFFRDRFNNMWPMGV--TKIEGALYFENGWKKFIEDNNtLEYGDFMIFDYDGNETFDFKV 93
55..445566789*******.553555..7789***************..******************986489***********99995554 PP
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2 | B3 | 30.8 | 5.3e-10 | 245 | 313 | 12 | 83 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
++++ ++p + +++++++ + ++++d+ gr++e k++y+k + r++l +GW++ ++ n ++ +D++ F+
Solyc01g108940.1.1 245 RRNQQYVPIDVVRDYKLE--LPPSMIIRDSAGREFETKVKYWKDG-RIWLVGGWRSICRWNLVEKNDSLQFT 313
567788999999999766..55679*****************996.899**********************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MEKGFFRIFN PESSAKRMKI PSSYATYKNG KLPRNVFFRD RFNNMWPMGV TKIEGALYFE 60 NGWKKFIEDN NTLEYGDFMI FDYDGNETFD FKVLEMSGCV KEGAKCEKKK EVYVEHRKSV 120 EPKEKNRIGD NNDSSSDDDN ANNYMIEEEE SNVKEEVEKE EEEDREEKET MEEVEDEAEE 180 EEDEEEIETT QTFKKRRSGS KAGRRKAITC KVRNMIDRHG IDIFRSGSAT KPKNPYFVAK 240 IIAKRRNQQY VPIDVVRDYK LELPPSMIIR DSAGREFETK VKYWKDGRIW LVGGWRSICR 300 WNLVEKNDSL QFTTRIFSNN GLERQVKSTD MIKNQQASIY DRGSSVKGQK NTLTLQNSLN 360 RLLLTVKATQ LK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238499 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence |