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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g107410.2.1 |
Common Name | LOC101247266 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HB-PHD |
Protein Properties |
Length: 797aa MW: 87482 Da PI: 5.5594 |
Description |
HB-PHD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g107410.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 42.7 | 9.3e-14 | 559 | 611 | 3 | 55 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
kR t+ + +++L e F+ n+yp+++++e+L k+lgLt qV+ WF N R +
Solyc01g107410.2.1 559 KRKTYGEVSTKRLYESFKDNQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 611
79999999*****************************************9755 PP
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2 | PHD | 38.1 | 3.4e-13 | 213 | 268 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51
+C+ Cg+ ++++++lCdg C++ fH+ C++++l +e++p + wlC+ C++k
Solyc01g107410.2.1 213 FCAKCGSmdLPADNDIILCDGaCERGFHQLCVEPPLLKEDIPPDdeGWLCPGCDCK 268
699****87677********66*******************99999*******985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 797 aa
Download sequence Send
to blast |
MSTLGNTSVS PEKARTAGGG HHTASAGNMS ENLGADQSRE SCENTVQNLN QSEYREKSPG 60 QPRKRKSISG SPISSTRLLR SKSKEKSGAS EAKNTVVTHD ATEEKKRKRR KKKHSKHIAA 120 NEFTRIRGHL RYLLQRIKYE QTLIEAYSGE GWKGQSLEKI KLEKELQRAK THIFRYKLKI 180 RDLFQRLDTL LAEGRLPASL FDNEGEIDSE DIFCAKCGSM DLPADNDIIL CDGACERGFH 240 QLCVEPPLLK EDIPPDDEGW LCPGCDCKVD CIDLLNDLQG TDLSVTDSWE KVYPKEAAAA 300 ASGEKLDDIS GLPSDDSEDD DYNPEAPDVG KNDSEDESSS DESESDFYSA SEDLAEAPTK 360 DDEILGLSSE DSEDDDYNPD DPDKDEPVKT ESSSSDFTSD SEDFSLIVDT NRLRGDEQGV 420 SSSVDNSMPN SVSLKEKAKV GKAKGNSLKD ELSYLMQSDS PLVSAKRHIE RLDYKKLHDE 480 TYGNGSSDSS DEDYDDGPLP KVRKLRNAKG AMAAPSSTPA DIKYQSGKQK GSGHASDSGI 540 SEKLKVGGTG TSESPSSGKR KTYGEVSTKR LYESFKDNQY PDRDAKEKLG KELGLTAHQV 600 SKWFENARHC HRHSPNWKKI MSHKVSEESP SKSQIIGEPL GTESNSIIAS CNGVEKLEQP 660 KQCLNGEKGH AIDKSEEELL IQDTSGKKSS EPTKKVHTTN EGSEDTPRSK TSKKQKAKVG 720 TANDNTTEQA SGGTPCSKTY KKQKAKVGTA NSQNDNTTDQ GPDDTPQSKT RKKPMVKVDT 780 PNSQNVRRSS RLQKQG*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 104 | 109 | KKRKRR |
2 | 104 | 111 | KKRKRRKK |
3 | 104 | 112 | KKRKRRKKK |
4 | 105 | 110 | KRKRRK |
5 | 106 | 112 | RKRRKKK |
Functional Description ? help
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Source |
Description |
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By pathogen infection. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G19510.1 | 9e-91 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |