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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g106720.1.1 |
Common Name | LOC101252829 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
M-type_MADS |
Protein Properties |
Length: 212aa MW: 23531.2 Da PI: 10.3481 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g106720.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 63.6 | 2.1e-20 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+ +sn vtfskRr g++KKA+EL++LC++e+a+++fs+ k++ +
Solyc01g106720.1.1 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGHKVFSF 63
6678999********************************9999877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 212 aa
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MAKKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPGHKV 60 FSFGHPNVDS IVNRFLTRNP TSSSSTTCQL VEAHRNANVR ELNAQLTEIL NQLEFEKKRE 120 VEIEKIQKGK IGKNWWEGPL NELEHGELEQ LKLGMEELKK NVTKQMQKII FEASNAPTFF 180 LGGSSSSNGD VKNMKGLGLS MATNGGHTSF P*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-18 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
5f28_B | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
5f28_C | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
5f28_D | 8e-18 | 8 | 93 | 2 | 87 | MEF2C |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. |
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC240204 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence |
Publications
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- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]
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