PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g106700.2.1 | ||||||||
Common Name | LOC101252236 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24279.5 Da PI: 7.3452 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.4 | 1e-19 | 19 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n+ r+vtfskRr g++KKA+EL++L +ae+a+++ s ++++l+++ Solyc01g106700.2.1 19 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIAILVQSlKRQRLFTF 68 78*************************************99567889888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-24 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.423 | 11 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-22 | 12 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-11 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-19 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-11 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTTINAVKKT QGRRKIAIKP IDNQNSRHVT FSKRRLGLFK KASELCILSG AEIAILVQSL 60 KRQRLFTFGH PSPDAVIDRY LTGKSVSPGD GDQFNLQQSN QYYSQICRDL ELEKQKKENI 120 EESKMVNNGG FWWNEPIDDM GIEGLEEFMS ALEELKKKVT MRADELSMIN GSSSNSTMKI 180 ARFGAEDQYF NESIDYCSSI VPFDFNQPGD RQF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g106700.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240204 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231377.1 | 1e-159 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7ERW3 | 1e-158 | A0A3Q7ERW3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106700.2.1 | 1e-158 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-41 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g106700.2.1 |
Entrez Gene | 101252236 |
Publications ? help Back to Top | |||
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