PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g106460.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27055.1 Da PI: 7.8995 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.4e-13 | 63 | 110 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Solyc01g106460.2.1 63 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 110 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.821 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-11 | 63 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-17 | 64 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 64 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.63E-13 | 65 | 114 | No hit | No description |
SMART | SM00353 | 4.8E-15 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKPKEETTNL SSSSITFAAD HCHNNMVCHQ DSFANQNYMM FKAASCQGAN KSVSTNGKLT 60 QAQDHIIAER KRREKLSQRF IALSALIPGL KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT 120 KKKSVESVVF VKKYELYGDG ENSSSDENYS SGTVPVDEAL PEIEARISEK DVLIRIHCEK 180 SKGVVEKTVA EIEKLHLSVI NTCALSFGTS ALDITIIAQM DEEFAMTVKD LVKNLRSALK 240 VFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 9e-15 | 64 | 113 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 73 | ERKRRE |
2 | 69 | 74 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6620 | 1e-152 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g106460.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238928 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230658.1 | 1e-178 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 2e-65 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A3Q7ERR2 | 1e-177 | A0A3Q7ERR2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106460.2.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g106460.2.1 |
Publications ? help Back to Top | |||
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