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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g106230.2.1 |
Common Name | LOC101244128, LOC101250170 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 337aa MW: 39540.3 Da PI: 5.8215 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g106230.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 59.6 | 5.3e-19 | 5 | 91 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f+k++ s ++ +rl +p +f+ ++ + + ++++ l+d+ g+ W v + +k +g +++ GW++F ++n +++gDf+vF +dg++ f ++
Solyc01g106230.2.1 5 FVKIF--SPENSGKRLKIPTSFT-YYK-NRKLPMKINLRDRFGNMWPVGV--NKIGGNLYFQYGWEKFIEDNSVEVGDFLVFDYDGNKMFDFK 91
78888..66667778*******8.554.45699*****************..*********************************99877444 PP
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2 | B3 | 32.5 | 1.5e-10 | 240 | 328 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE CS
B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvf 97
+ ++++l++p + +++++++ + +t++d+ gr++ kl+ +k gr++l +GW++ ++ n ++ +D ++ +++ +r ++ +l+v+v+
Solyc01g106230.2.1 240 SKRRDQLYVPVDVVKDYKLE--LPSSMTIRDSIGREFVTKLNKWKD-GRIWLVGGWRSLCRWNLVEKNDHCICEFVrgKRnKDLHLRVQVL 327
567899***********988..55569999***********76666.5799********************99966324456777777776 PP
- CS
B3 98 r 98
r
Solyc01g106230.2.1 328 R 328
6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MEKGFVKIFS PENSGKRLKI PTSFTYYKNR KLPMKINLRD RFGNMWPVGV NKIGGNLYFQ 60 YGWEKFIEDN SVEVGDFLVF DYDGNKMFDF KLLGRTKCEK NGVGGLKAEE MIVEHQKSRE 120 SKEKNWASDS CNSFSSYDND VEYMGERDED EDEDEDKDEE YKETKKVACY VEDEEEDDED 180 EEEEDEGENQ RTNTHKKEAL RSKAFACKVR NRHDHFGVDI FKSGRATQPK NPYFVAKIRS 240 KRRDQLYVPV DVVKDYKLEL PSSMTIRDSI GREFVTKLNK WKDGRIWLVG GWRSLCRWNL 300 VEKNDHCICE FVRGKRNKDL HLRVQVLREG ESSVTL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC240190 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100n21 map 1, complete sequence |
GenBank | AC240855 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100k15 map 1, complete sequence |
GenBank | AC240875 | 0.0 | Solanum lycopersicum strain Heinz 1706 clone slm-43e1 map 1, complete sequence |