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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g106170.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
M-type_MADS |
Protein Properties |
Length: 149aa MW: 17032.2 Da PI: 10.9752 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g106170.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.5 | 1.8e-28 | 70 | 118 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
ri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++
Solyc01g106170.2.1 70 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFA 118
9***********************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 149 aa
Download sequence Send
to blast |
MIFLDRCQRV RLLWCTRASR GSKISDYFFT KPIFLLSLSL SICRISLLSK SLKLSRLIKE 60 MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFANN 120 SMKSTIDRYN KIKEENNNMN PMSEVKVT*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}. |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC239238 | 1e-109 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-156i17 map 1, complete sequence |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Yu LH, et al.
Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression. Mol Plant, 2017. 10(6): p. 834-845 [PMID:28438576] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] - Sun CH, et al.
Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis. Plant Sci., 2018. 266: p. 27-36 [PMID:29241564]
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