PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g105230.2.1 | ||||||||
Common Name | LOC101055571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CAMTA | ||||||||
Protein Properties | Length: 1041aa MW: 117418 Da PI: 5.4972 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 178.2 | 1.1e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e ++rwl++ ei++iL n++k++lt e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ Solyc01g105230.2.1 20 SEvQHRWLRPAEICEILRNHRKFHLTPEAPFRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDD 110 5559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Le++l +iv+vhylevk Solyc01g105230.2.1 111 NFQRRSYWMLEQDLMHIVFVHYLEVK 136 ***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.494 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-78 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.4E-49 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.7E-6 | 450 | 539 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.18E-17 | 454 | 540 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 4.4E-7 | 454 | 539 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.51E-15 | 641 | 744 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.2E-15 | 646 | 746 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.17E-13 | 652 | 742 | No hit | No description |
PROSITE profile | PS50297 | 16.865 | 654 | 739 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.778 | 687 | 719 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.003 | 687 | 716 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2700 | 726 | 755 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 4.51E-7 | 861 | 912 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 5.8 | 861 | 883 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.023 | 862 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0029 | 863 | 882 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0012 | 884 | 906 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 885 | 909 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.2E-5 | 887 | 906 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1041 aa Download sequence Send to blast |
MEDCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNHR KFHLTPEAPF RPVSGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML 120 EQDLMHIVFV HYLEVKGNKV NVSSIRSTKS VHPNYLNDCS LSDSFSTRHK KLTSANADST 180 SLASTLTEAH EEAESEDSHQ ACSRFHSYPD RASGMDSHLV ENRDTISSSY GSPQSSVEYT 240 PLPGIDGSGK CDLGNFASGP QRTIDLGSWE PLPQHCLNGE MVCQDDFKNN LSVHGNWQFH 300 GQNVNQDLIA DSSYDLGLPS DLLTVRGPSY LYSNEKEEQL AQLNLQFLKS LVEVQGDINQ 360 ENSMDMLELG DYSTIKQPHL SSVKVEEGLK KVDSFSRWVA KELEDVEELH MQPSNQMSWN 420 VIDTEEEGSC LPSQLHVDSD SLNLSLSQEQ VFSIIDFSPN WAYSNLETKV LITGRFLKSE 480 GELVEYKWSC MFGEVEVPAE VLADGVLRCH APPHKPGVLP FYVTCSNRLA CSEVREFEYR 540 FGPYQEVGAA DVSMTEKHLL ERIENLLSLG PVSSCRSSDS MEDSEEKRST VNKIISMMEE 600 ENQPIIERAS YGDTSQCRVK EDLYFERKLK QNFYAWLVHQ VTDDGRGRTL LDGEGQGVLH 660 LVAALGYDWA FKPILASGVS VDFRDMNGWT ALHWAAFYGR EKTVVSLVSL GASPGALTDP 720 SAEFPLGRTP ADLASANGHK GISGFVAESS LTTHLSKLTV TDAKEELDSE VCEAKVGETV 780 TERVAVSTTE NDVPDVLSLK DSLAAIRNAT QAAARIHQIF RVQSFQRKQI IEHCDNELSS 840 DENAIAIVAS RACKLGQNNG IAHAAAIQIQ KKFRGWNKRK EFLLIRQKIV KIQAHIRGHQ 900 VRKKYKPIIW SVGILEKVIL RWRRKRSGLR GFRSEAVMSK PSTQEDSLPE DDYDFLKEGR 960 KQTEVRMQKA LARVKSMTQY PEGRAQYRRL LTAAEGLREV KQDGPIQIPE IPEDTIYPEE 1020 ELFDVDSLLD DDTFMSIAFE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cxk_A | 2e-13 | 454 | 543 | 9 | 92 | calmodulin binding transcription activator 1 |
2cxk_B | 2e-13 | 454 | 543 | 9 | 92 | calmodulin binding transcription activator 1 |
2cxk_C | 2e-13 | 454 | 543 | 9 | 92 | calmodulin binding transcription activator 1 |
2cxk_D | 2e-13 | 454 | 543 | 9 | 92 | calmodulin binding transcription activator 1 |
2cxk_E | 2e-13 | 454 | 543 | 9 | 92 | calmodulin binding transcription activator 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23716 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g105230.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN558810 | 0.0 | Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885047.1 | 0.0 | calmodulin-binding transcription activator 2 isoform X3 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A3Q7ER35 | 0.0 | A0A3Q7ER35_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g105230.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2230 | 21 | 46 |
Representative plant | OGRP562 | 15 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g105230.2.1 |
Entrez Gene | 101055571 |
Publications ? help Back to Top | |||
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