PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g104900.2.1
Common NameLOC101246188
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 199aa    MW: 22851.3 Da    PI: 4.6928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g104900.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.11.7e-3681311128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++PwdL+ k+  e ++wyf+s+r +        +r+t++gyWk+ g d++
  Solyc01g104900.2.1   8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLNLYPYDPWDLDGKAMVEGNKWYFYSRRTQ--------SRITENGYWKSLGVDEP 89 
                         79*************************999.99**************977777899******9854........799************** PP

                 NAM  92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+     +++ vg+kk  +fy g+ p+g+kt+Wvm+e++l
  Solyc01g104900.2.1  90 IFSTghnnnNNNIVGMKKYYAFYLGELPEGVKTNWVMQEFSL 131
                         ***9776666666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-476163IPR003441NAC domain
PROSITE profilePS5100545.1818165IPR003441NAC domain
PfamPF023654.9E-229131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGDSNVKLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLNLYPYDP WDLDGKAMVE  60
GNKWYFYSRR TQSRITENGY WKSLGVDEPI FSTGHNNNNN NIVGMKKYYA FYLGELPEGV  120
KTNWVMQEFS LNSESSSGSS RSSSKRRTRS KIDYSGWVIC RVYEHNYDND DDNNGPELSC  180
LDEVFLSLDD LDEISLPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-37416613166NO APICAL MERISTEM PROTEIN
1ut4_B7e-37416613166NO APICAL MERISTEM PROTEIN
1ut7_A7e-37416613166NO APICAL MERISTEM PROTEIN
1ut7_B7e-37416613166NO APICAL MERISTEM PROTEIN
3swm_A7e-37416616169NAC domain-containing protein 19
3swm_B7e-37416616169NAC domain-containing protein 19
3swm_C7e-37416616169NAC domain-containing protein 19
3swm_D7e-37416616169NAC domain-containing protein 19
3swp_A7e-37416616169NAC domain-containing protein 19
3swp_B7e-37416616169NAC domain-containing protein 19
3swp_C7e-37416616169NAC domain-containing protein 19
3swp_D7e-37416616169NAC domain-containing protein 19
4dul_A7e-37416613166NAC domain-containing protein 19
4dul_B7e-37416613166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.208040.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g104900.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230640.11e-147NAC domain-containing protein 104
SwissprotQ8GWK61e-80NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3Q7FAY51e-145A0A3Q7FAY5_SOLLC; Uncharacterized protein
STRINGSolyc01g104900.2.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-75xylem NAC domain 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]