PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc01g104760.2.1 | ||||||||
Common Name | LOC101264265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 385aa MW: 43916.4 Da PI: 8.1335 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.9 | 4.7e-22 | 82 | 169 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +W++++v++Li+a ++++e+ ++ kk++W+++s +m+erg+++sp+qC++k+++lnk+++++++ +++t ++++++ ++++ + Solyc01g104760.2.1 82 KWSNDMVKLLITALSYIGEDALSNGvlVKKGKWRAISCVMSERGYRVSPQQCEDKFNDLNKKFRRLNDVLGRGTaCNVVENPVLLEIM 169 7****************998776533499********************************************549999888887766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-20 | 80 | 195 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MQVNHHLAGY PNQGPVVLMQ HAPQVRSSGV SNMEDTPQEM QLLGAVRLNR VEMPESYHEG 60 LNDAREVSGH TEGKQPVYQR MKWSNDMVKL LITALSYIGE DALSNGVLVK KGKWRAISCV 120 MSERGYRVSP QQCEDKFNDL NKKFRRLNDV LGRGTACNVV ENPVLLEIMD LPNDLKEEMN 180 KILGSRQLFY EEMCSYNNQN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRNIG 240 GEESLDHNTT ADPNLVQHMP AKRKARGEER NLHMARLSLN GTATLDPDPN MLYPNSNGIQ 300 LSLNKKEKKI QDEHVLLRLQ KMEEQKLLIQ GKLLELEKQR VNLEISCSEE DMGLQKMQLD 360 NKVIKLENKQ LMLELKCGGK QRLV* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00242 | DAP | Transfer from AT1G76870 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc01g104760.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC212792 | 2e-06 | Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019067375.1 | 0.0 | uncharacterized protein LOC101264265 | ||||
Refseq | XP_019067376.1 | 0.0 | uncharacterized protein LOC101264265 | ||||
Refseq | XP_025883714.1 | 0.0 | uncharacterized protein LOC101264265 | ||||
Refseq | XP_025883715.1 | 0.0 | uncharacterized protein LOC101264265 | ||||
TrEMBL | A0A3Q7FAV2 | 0.0 | A0A3Q7FAV2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g104760.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12585 | 16 | 20 | Representative plant | OGRP2796 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76870.1 | 9e-70 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc01g104760.2.1 |
Entrez Gene | 101264265 |
Publications ? help Back to Top | |||
---|---|---|---|
|