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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g104760.2.1 |
Common Name | LOC101264265 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
Trihelix |
Protein Properties |
Length: 385aa MW: 43916.4 Da PI: 8.1335 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g104760.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 69.9 | 4.7e-22 | 82 | 169 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85
+W++++v++Li+a ++++e+ ++ kk++W+++s +m+erg+++sp+qC++k+++lnk+++++++ +++t ++++++ ++++ +
Solyc01g104760.2.1 82 KWSNDMVKLLITALSYIGEDALSNGvlVKKGKWRAISCVMSERGYRVSPQQCEDKFNDLNKKFRRLNDVLGRGTaCNVVENPVLLEIM 169
7****************998776533499********************************************549999888887766 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MQVNHHLAGY PNQGPVVLMQ HAPQVRSSGV SNMEDTPQEM QLLGAVRLNR VEMPESYHEG 60 LNDAREVSGH TEGKQPVYQR MKWSNDMVKL LITALSYIGE DALSNGVLVK KGKWRAISCV 120 MSERGYRVSP QQCEDKFNDL NKKFRRLNDV LGRGTACNVV ENPVLLEIMD LPNDLKEEMN 180 KILGSRQLFY EEMCSYNNQN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRNIG 240 GEESLDHNTT ADPNLVQHMP AKRKARGEER NLHMARLSLN GTATLDPDPN MLYPNSNGIQ 300 LSLNKKEKKI QDEHVLLRLQ KMEEQKLLIQ GKLLELEKQR VNLEISCSEE DMGLQKMQLD 360 NKVIKLENKQ LMLELKCGGK QRLV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC212792 | 2e-06 | Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence |