PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g103780.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 446aa MW: 47550.6 Da PI: 9.42

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g103780.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.9	1.2e-40	136	239	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ Solyc01g103780.2.1 136 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP--- 223 56799****************************************************************9997777777777754444... PP TCP 92 ksaakskksqksaasalnla 111 +sk++++s +sal+la Solyc01g103780.2.1 224 ----PSKSAPHSFHSALALA 239 ....3333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.1E-39	141	242	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	142	196	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQQQHQYQL LSQHHHHQQQ QQLQQQHGRS 60 SVPFMTSISI QPNAQAPITN SATNASPSTS SPTPPQPPHL VDASLAIATR SDTLVDPNKK 120 SQLAIQQTQP VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE 180 TIEWLLQQAE PAIIAATGTG TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA 240 AHQTPHPFEE GFSQMLGFHH YTHLLTQNPI AESIPGGGGG GGSSGDGGGV GGQEGADNYL 300 RKRYREDLFK EEGSSNQQGE ASGGSSSPSN KQFKGNSPQL PNKPNSQEGV AGPSSNMLRH 360 TNVIPATGLW AVAPPPTSGT TGGSPFWMLP VTSGQTLSAP MASTSGTTTL ESQMWPFPMG 420 SSNTPLHFIN NNHLNILGLE WPKLI*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQQQHQYQL LSQHHHHQQQ QQLQQQHGRS  60
SVPFMTSISI QPNAQAPITN SATNASPSTS SPTPPQPPHL VDASLAIATR SDTLVDPNKK  120
SQLAIQQTQP VQPQQPPPKR QTKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE  180
TIEWLLQQAE PAIIAATGTG TIPANFSTLN ISLRSSGSTL SAPPSKSAPH SFHSALALAA  240
AHQTPHPFEE GFSQMLGFHH YTHLLTQNPI AESIPGGGGG GGSSGDGGGV GGQEGADNYL  300
RKRYREDLFK EEGSSNQQGE ASGGSSSPSN KQFKGNSPQL PNKPNSQEGV AGPSSNMLRH  360
TNVIPATGLW AVAPPPTSGT TGGSPFWMLP VTSGQTLSAP MASTSGTTTL ESQMWPFPMG  420
SSNTPLHFIN NNHLNILGLE WPKLI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.13098	0.0	flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g103780.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496329	0.0	Solanum lycopersicum TCP transcription factor 11 (TCP11) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234831.2	0.0	TCP transcription factor 11
TrEMBL	G3BGV1	0.0	G3BGV1_SOLLC; TCP transcription factor 11
STRING	Solyc01g103780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-54	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc01g103780.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]