PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g103550.1.1 | ||||||||
Common Name | LOC104645138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 312aa MW: 35839.7 Da PI: 7.8667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.7 | 1.3e-12 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ + r+ tf kR++g+lKK +E +LC+++ ++i++++++ Solyc01g103550.1.1 11 ISKEKSRNATFKKRKEGLLKKLYEFTTLCNVNGLMIMYGPKQ 52 7888999********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.414 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.4E-12 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-15 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.52E-17 | 2 | 50 | No hit | No description |
PRINTS | PR00404 | 2.9E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-13 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGRAKLKMEL ISKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGLMIMYGP KQGNGSECRP 60 EIWTNSSGSS SSTNSKSLQQ QQEEIENLID EYKKENSLQS GSSKTFGLSD YFVDRNKRVE 120 EEFIKLRKMN MEKKYPCWLE FMDQLSEFKL RDFLTLLDDR VENVKARIHL LKGNFSGLMG 180 GEMIDLGGGN QWTHYNDNVM VQGGGMEYGD YNQLQAPIYH QEMRMVMMNE NDWPQYNNGA 240 SSSSSAGNGS NNMMCALMKY ETMMPSNNHL AYSPYVAPTI LQQTPCMMMP QHSWRDNDRD 300 DKAKFSPYMT K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g103550.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068382.1 | 0.0 | agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A3Q7EQ56 | 0.0 | A0A3Q7EQ56_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g103550.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-15 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g103550.1.1 |
Entrez Gene | 104645138 |
Publications ? help Back to Top | |||
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