PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g103550.1.1
Common NameLOC104645138
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 312aa    MW: 35839.7 Da    PI: 7.8667
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g103550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.71.3e-121152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i+ +  r+ tf kR++g+lKK +E  +LC+++ ++i++++++
  Solyc01g103550.1.1 11 ISKEKSRNATFKKRKEGLLKKLYEFTTLCNVNGLMIMYGPKQ 52
                        7888999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.414151IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-12161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-15156IPR002100Transcription factor, MADS-box
CDDcd002663.52E-17250No hitNo description
PRINTSPR004042.9E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRAKLKMEL ISKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGLMIMYGP KQGNGSECRP  60
EIWTNSSGSS SSTNSKSLQQ QQEEIENLID EYKKENSLQS GSSKTFGLSD YFVDRNKRVE  120
EEFIKLRKMN MEKKYPCWLE FMDQLSEFKL RDFLTLLDDR VENVKARIHL LKGNFSGLMG  180
GEMIDLGGGN QWTHYNDNVM VQGGGMEYGD YNQLQAPIYH QEMRMVMMNE NDWPQYNNGA  240
SSSSSAGNGS NNMMCALMKY ETMMPSNNHL AYSPYVAPTI LQQTPCMMMP QHSWRDNDRD  300
DKAKFSPYMT K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g103550.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068382.10.0agamous-like MADS-box protein AGL11
TrEMBLA0A3Q7EQ560.0A0A3Q7EQ56_SOLLC; Uncharacterized protein
STRINGSolyc01g103550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-15M-type_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]