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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g100990.2.1 |
Common Name | LOC101259582 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 151aa MW: 16845.7 Da PI: 8.2041 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g100990.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 32.2 | 1.8e-10 | 58 | 80 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C++f rtG+C+yGd+Ck+ H++
Solyc01g100990.2.1 58 VCNHFVRTGYCQYGDSCKYYHPK 80
6********************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MPLGKYYCDY CDKEFQDTAA ARRRHLQGVQ HQRAKALWYD SLRNPQLFND PDSFGKGVCN 60 HFVRTGYCQY GDSCKYYHPK QNPQTVNQTG LPPGENSREG FHSSSQPFGS ASFPGDVFRE 120 KAGASLSNLP PSLRPPPEGG YPPLPFVEWG *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238910 | 4e-67 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131o24 map 1, complete sequence |
GenBank | AC238948 | 4e-67 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-1h15 map 1, complete sequence |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]
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