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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g100200.2.1 |
Common Name | GRAS4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GRAS |
Protein Properties |
Length: 667aa MW: 75737.7 Da PI: 6.7624 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g100200.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 365.5 | 7.4e-112 | 286 | 657 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+ lL++cA+a+++ d + a++lL r++e+++p+gd ++Rla+y+++AL+arl+++++ ly a +ps+ s ++ l+a+k+f ++P+
Solyc01g100200.2.1 286 LRALLTQCAQAMANYDSRTANELLMRIREHSTPHGDGTERLAHYLANALEARLSGTGTALYTAYAPSRIS---AANILKAYKAFIRACPFK 373
5789************************************************************999998...899*************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
+s++ aN+ I + ++g+ ++HiiDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g + ++eetg+rL+k+++++ vpf f++
Solyc01g100200.2.1 374 LLSNIFANKYIRKVIAGAPKIHIIDFGILYGFQWPCLIQGLSMRAGGPPELRITGIDLPQPGfkPAGRVEETGRRLEKYCKRFSVPFVFKA 464
*************************************************************9999************************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
+ak++e+++leeL+v+++E+l+Vn+ ++l +++de+v +s+rd+vL+l+++++P+++++ + n++ F++rf eal ++s+l+d++
Solyc01g100200.2.1 465 -IAKKWESITLEELEVQRDEVLVVNSLYRLGNIPDETVVPNSPRDAVLNLIRRIRPDLFIHGALNGTFNTPFFVTRFREALFHFSSLYDMF 554
.7***************************************************************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
ea+lpre+e+r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGFk+vpl+++++k ++ +r + + ++v+e+ +++++gW
Solyc01g100200.2.1 555 EATLPREDEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCVRAGFKQVPLDQEIVKIVRNKVRSEYHRDFSVDEDGHWMLQGW 645
**************************************************************************999************** PP
GRAS 363 kdrpLvsvSaWr 374
k+r ++++S+W+
Solyc01g100200.2.1 646 KGRVIYALSCWK 657
***********8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 667 aa
Download sequence Send
to blast |
MEALFQEQLF PCADSFIFRH PSIPMDPRKE VIQNGLNNHP SFDQDYFSNH VVGVGDSSPP 60 PQEEGEKDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL QAKERYLSDV LHGSENNYSP 120 QSVIINPHDS SSFLSNYSPD SIESPQWDLN FESPASMSTL SNHDSFFTSF GNGHFEEGAV 180 NVLQSGSSSN SPTGLREKKN RHRGDVAADQ QRSNKQMATF VHDESEPLEM YDNVLLCLNN 240 PYVEQHSATS ITSYSPPNEA KKTSKVGRPR GGRKHSSIVK KEMVDLRALL TQCAQAMANY 300 DSRTANELLM RIREHSTPHG DGTERLAHYL ANALEARLSG TGTALYTAYA PSRISAANIL 360 KAYKAFIRAC PFKLLSNIFA NKYIRKVIAG APKIHIIDFG ILYGFQWPCL IQGLSMRAGG 420 PPELRITGID LPQPGFKPAG RVEETGRRLE KYCKRFSVPF VFKAIAKKWE SITLEELEVQ 480 RDEVLVVNSL YRLGNIPDET VVPNSPRDAV LNLIRRIRPD LFIHGALNGT FNTPFFVTRF 540 REALFHFSSL YDMFEATLPR EDEDRKLFEE EVFARDAMNV IACEGTERVE RPETYKQWQL 600 RCVRAGFKQV PLDQEIVKIV RNKVRSEYHR DFSVDEDGHW MLQGWKGRVI YALSCWKPTK 660 QSVKLV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238503 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence |
GenBank | AC238920 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Mayrose M,Ekengren SK,Melech-Bonfil S,Martin GB,Sessa G
A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response. Mol. Plant Pathol., 2006. 7(6): p. 593-604 [PMID:20507472]
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