PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g099340.2.1
Common NameLOC101247561
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 425aa    MW: 47449.7 Da    PI: 8.8514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g099340.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-057092123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Solyc01g099340.2.1 70 FICEVCNKGFQREQNLQLHRRGH 92
                        89*******************88 PP
2zf-C2H2130.0003146168123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Solyc01g099340.2.1 146 WKCEKCSKKYAVQSDWKAHSKTC 168
                         58*****************9998 PP
3zf-C2H210.70.0017176194523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg+ Fsr++++++H   +
  Solyc01g099340.2.1 176 DCGTIFSRRDSFVTHRAFC 194
                         8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.17E-76992No hitNo description
PROSITE profilePS5015710.997092IPR007087Zinc finger, C2H2
SMARTSM003550.00527092IPR015880Zinc finger, C2H2-like
PfamPF121712.0E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355120111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.17E-7141166No hitNo description
SMARTSM00355140146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSNSNLSSGN SSEEADETPY VLSSTSDGSS AHQQHSQTNN KKRRKLPGNP DPSAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTSNEIKKRV YICPESSCIH  120
HNPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT KEYKCDCGTI  180
FSRRDSFVTH RAFCDALAEE NNKVNQVLAS TTQPLATGPE LISTTQMLNL PQIRNSNMKI  240
PSIPLNMAGS MFSSSSGFNQ LGTNSSNMSS ATALLQQAAQ MGATVNNNMN STLFNGVQIP  300
IQSNHDHDQN ETQIGSILQG FGGSMLQNNG DDHHKSSRVL QNEQGWFNNN NNNSNTGLFN  360
EKQRTLNKEA GHSNEESLTL DFLGIGGMRH RNLHEMHQHQ QEMSFEQQQV NHQSIQRVNS  420
IWDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35142207368Zinc finger protein JACKDAW
5b3h_F5e-35142207368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14044KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.104700.0floral bud| flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g099340.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937770.0Solanum lycopersicum chromosome 1 clone C01HBa0051C14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230217.10.0protein indeterminate-domain 12
TrEMBLA0A3Q7EN510.0A0A3Q7EN51_SOLLC; Uncharacterized protein
STRINGSolyc01g099340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-97C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]