PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g098220.1.1
Common NameLOC101259300
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 242aa    MW: 26459.4 Da    PI: 6.4268
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g098220.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.8e-39371371100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPv G+v++il+lqqq+++l
  Solyc01g098220.1.1  37 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTITYEAQARLSDPVFGCVSTILALQQQVASL 127
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         ++ela ++++
  Solyc01g098220.1.1 128 QSELAIVQTQ 137
                         *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10236138IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3837135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDERSSDGAD RRKGPGKHVS GAVEQQASGV LPASTAPCGA CKFLRRKCIN GCVFAPYFGS  60
DQGAARFAAV HKVFGASNVS KLLLHIPANR RQDAVVTITY EAQARLSDPV FGCVSTILAL  120
QQQVASLQSE LAIVQTQVMN SRYAMANAYH NISQEQHIAI LQPSYSNNSS ISNNNINLIN  180
NFNNFTTNNI FDHQLHGSVT CTANNSPSFD PIHQLREEEE EEEEEESHNP LAFTNHMFHS  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-40271441115LOB family transfactor Ramosa2.1
5ly0_B8e-40271441115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g098220.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2447118e-08Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-77i11 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231253.11e-180LOB domain-containing protein 20
SwissprotQ9SRV35e-70LBD20_ARATH; LOB domain-containing protein 20
TrEMBLM1C1R41e-133M1C1R4_SOLTU; Uncharacterized protein
STRINGSolyc01g098220.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-57LOB domain-containing protein 20
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]