PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g098050.1.1 | ||||||||
Common Name | LOC101257514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18178 Da PI: 10.4525 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.7 | 3e-13 | 13 | 58 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 i ++ r vtfskRr+g++KKA+ +++ +va i++s+tg+ y+ Solyc01g098050.1.1 13 IIKETSRMVTFSKRRKGLFKKAKQFESMTGSRVASIVLSPTGRPYT 58 556789************************************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-15 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.979 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-16 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-11 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-18 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.89E-13 | 17 | 58 | No hit | No description |
PRINTS | PR00404 | 2.6E-11 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-11 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGTGKKKIEI EKIIKETSRM VTFSKRRKGL FKKAKQFESM TGSRVASIVL SPTGRPYTCG 60 DVDYAIRTHF SNSGRCMKLL ITDIMNSHDS NSSSNVVVYG ETSRSKFSSA PKKNSLHNWV 120 KRIDVEQCQN LNWLLMLKQQ LEGTKEKIGE DVESFKAFFV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g098050.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010315464.1 | 1e-116 | agamous-like MADS-box protein AGL28 | ||||
TrEMBL | A0A3Q7EMH0 | 1e-115 | A0A3Q7EMH0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g098050.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17310.1 | 1e-09 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g098050.1.1 |
Entrez Gene | 101257514 |
Publications ? help Back to Top | |||
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