PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g096710.2.1

Common Name

LOC101246965

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 277aa MW: 30883.4 Da PI: 5.1691

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g096710.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.8e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Solyc01g096710.2.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.37E-20	4	100	IPR009072	Histone-fold
Pfam	PF00808	1.7E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP KRRKVAIEEH HDSEDEYKKS 120 RTEMSPVGSS GRGRGRGRGR GRGRVSRADK ELSRPDMQLE SCTSAQQSVQ QNPNPGTQTE 180 NCSEPKESPT QDSTVCDKEN SVVTTPNLKV NVDDNTDKPA APEIAPCNPS PRPVNEKAEE 240 GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	8e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGRGRG
2	133	143	RGRGRGRGRGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14005	0.0	flower\| fruit\| leaf\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g096710.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014143	0.0	Lycopersicon esculentum clone 133262F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230049.1	0.0	dr1-associated corepressor isoform X1
TrEMBL	M0ZUP5	1e-173	M0ZUP5_SOLTU; Uncharacterized protein
STRING	Solyc01g096710.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-67	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Solyc01g096710.2.1
Entrez Gene	101246965

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]