PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g096710.2.1 | ||||||||
Common Name | LOC101246965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 277aa MW: 30883.4 Da PI: 5.1691 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 58.2 | 1.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Solyc01g096710.2.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.37E-20 | 4 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP KRRKVAIEEH HDSEDEYKKS 120 RTEMSPVGSS GRGRGRGRGR GRGRVSRADK ELSRPDMQLE SCTSAQQSVQ QNPNPGTQTE 180 NCSEPKESPT QDSTVCDKEN SVVTTPNLKV NVDDNTDKPA APEIAPCNPS PRPVNEKAEE 240 GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 8e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 142 | RGRGRGRGRG |
2 | 133 | 143 | RGRGRGRGRGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14005 | 0.0 | flower| fruit| leaf| trichome |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g096710.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014143 | 0.0 | Lycopersicon esculentum clone 133262F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230049.1 | 0.0 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | M0ZUP5 | 1e-173 | M0ZUP5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g096710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7960 | 22 | 30 |
Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-67 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g096710.2.1 |
Entrez Gene | 101246965 |
Publications ? help Back to Top | |||
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