PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 822aa MW: 89849.9 Da PI: 6.2812

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g091630.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	5.8e-21	126	181	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k Solyc01g091630.2.1 126 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 181 688999***********************************************999 PP
2	START	198.5	3e-62	333	557	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +ep+W++s e++n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + Solyc01g091630.2.1 333 ELALAAMEELVKMAQTDEPLWFRSIeggrEILNHEEYIRTFTPCIGmrpnsFISEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaR 422 5899************************************9999****************************.******** PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg+++++++ng+s Solyc01g091630.2.1 423 TSTTDVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFPNSRRLPSGCVVQDMPNGYS 513 ************************************************************999******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwveh+++++ h l+r+l++ g+ +ga++wvatlqrqce+ Solyc01g091630.2.1 514 KVTWVEHAEYEEGANHHLYRQLISAGMGFGAQRWVATLQRQCEC 557 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-21	112	177	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-20	113	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	123	183	IPR001356	Homeobox domain
SMART	SM00389	5.2E-19	124	187	IPR001356	Homeobox domain
CDD	cd00086	5.34E-19	125	183	No hit	No description
Pfam	PF00046	1.7E-18	126	181	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	158	181	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.74	324	560	IPR002913	START domain
SuperFamily	SSF55961	3.3E-31	326	557	No hit	No description
CDD	cd08875	1.78E-122	328	556	No hit	No description
SMART	SM00234	5.5E-48	333	557	IPR002913	START domain
Pfam	PF01852	6.9E-54	333	557	IPR002913	START domain
SuperFamily	SSF55961	1.19E-23	576	807	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009827	Biological Process	plant-type cell wall modification
GO:0042335	Biological Process	cuticle development
GO:0043481	Biological Process	anthocyanin accumulation in tissues in response to UV light
GO:0048765	Biological Process	root hair cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000022	anatomy	plant cuticle
PO:0009001	anatomy	fruit
PO:0001002	developmental stage	fruit development stage

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MNFGGFLDNN SGGGGARIVA DIPFNHNNSS SNNDNKNNMP TGAISQPRLL PQSLAKNMFN 60 SPGLSLALQT GMEGQSEVTR MAENYEGNNS VGRRSREEEP DSRSGSDNLE GASGDEQDAT 120 DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM 180 KTQLERHENS ILRQENDKLR AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR 240 LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GSNGFGGMSN VPTTLPLAPP 300 DFGVGISNSL PVVPSTRQST GIERSLERSM YLELALAAME ELVKMAQTDE PLWFRSIEGG 360 REILNHEEYI RTFTPCIGMR PNSFISEASR ETGMVIINSL ALVETLMDSN KWAEMFPCLI 420 ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS 480 IDTIRETSGA PTFPNSRRLP SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM 540 GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS 600 TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL 660 RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSSMLILQET CIDAAGALVV 720 YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV 780 AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALQCE S*

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MNFGGFLDNN SGGGGARIVA DIPFNHNNSS SNNDNKNNMP TGAISQPRLL PQSLAKNMFN  60
SPGLSLALQT GMEGQSEVTR MAENYEGNNS VGRRSREEEP DSRSGSDNLE GASGDEQDAT  120
DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM  180
KTQLERHENS ILRQENDKLR AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR  240
LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GSNGFGGMSN VPTTLPLAPP  300
DFGVGISNSL PVVPSTRQST GIERSLERSM YLELALAAME ELVKMAQTDE PLWFRSIEGG  360
REILNHEEYI RTFTPCIGMR PNSFISEASR ETGMVIINSL ALVETLMDSN KWAEMFPCLI  420
ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS  480
IDTIRETSGA PTFPNSRRLP SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM  540
GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS  600
TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL  660
RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSSMLILQET CIDAAGALVV  720
YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV  780
AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALQCE S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16029	0.0	flower\| fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Function -- GeneRIF ? help Back to Top
These data provide new insight into the role of CD2 and ANL2 in regulating diverse metabolic pathways and in particular, those associated with epidermal cells. [PMID: 22623518] Results indicate that CD2 is essential both for normal cutin and wax deposition and for proper accumulation of specific metabolite. [PMID: 23912028]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00421	DAP	Transfer from AT4G00730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g091630.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ222185	0.0	Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234657.2	0.0	cutin deficient 2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A3Q7EKE6	0.0	A0A3Q7EKE6_SOLLC; Uncharacterized protein
STRING	Solyc01g091630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc01g091630.2.1
Entrez Gene	100316889

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Isaacson T, et al. Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss. Plant J., 2009. 60(2): p. 363-77 [PMID:19594708] Nadakuduti SS, et al. Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato. Plant Physiol., 2012. 159(3): p. 945-60 [PMID:22623518] Kimbara J, et al. Inhibition of CUTIN DEFICIENT 2 Causes Defects in Cuticle Function and Structure and Metabolite Changes in Tomato Fruit. Plant Cell Physiol., 2013. 54(9): p. 1535-48 [PMID:23912028]