PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRF

Protein Properties

Length: 421aa MW: 46582.2 Da PI: 9.3129

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g091540.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	67.4	1.9e-21	121	164	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+C H+hrg rsrk++e+ Solyc01g091540.1.1 121 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHVHRG-RRSRKPVEA 164 79*********************************.688998886 PP
2	WRC	58	1.6e-18	311	349	2	40
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 +++ rCrR+DGKkWRCs++v++ +k+CE H+hrg +r+r Solyc01g091540.1.1 311 SDEQRCRRSDGKKWRCSKTVVPCQKYCETHMHRGANRKR 349 6889********************************997 PP
3	QLQ	47.6	5.1e-17	57	93	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT aQ+q+L Q+ ++KyL++++PvP +L ++i++ Solyc01g091540.1.1 57 SVFTEAQFQELQLQAVIFKYLVSGLPVPFHLFFIIWN 93 67*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.7E-7	57	93	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.468	58	93	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.9E-12	59	92	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.67	121	165	IPR014977	WRC domain
Pfam	PF08879	8.2E-18	122	161	IPR014977	WRC domain
PROSITE profile	PS51667	20.714	310	354	IPR014977	WRC domain
Pfam	PF08879	5.0E-16	312	349	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MQLHLFSATP LSLSGKGKED EIKKKKGSPP CIELSLGYGS SSHVVEEDGK DDKSSNSVFT 60 EAQFQELQLQ AVIFKYLVSG LPVPFHLFFI IWNSVSSSLG DGGIYKLYPT LGRFDYTSMT 120 DPEPGRCRRT DGKKWRCKRD VIPGQKYCGQ HVHRGRRSRK PVEASEHVMR SDDTNIISKI 180 TKLYASGDDP GSKCAPASSK TSCLSSTSRT NQYNSIEDSS AKPRFINSGY GSEKQDTYMI 240 CKRKDITTSV RTPSFIAGDN ADSKNIDFNR ISPSKTNQKQ NCGEARKHGA LVPILGLSTK 300 SDQQHTIGSE SDEQRCRRSD GKKWRCSKTV VPCQKYCETH MHRGANRKRV ASVSVVVPPS 360 KSPSYRFCPP ENDGTRRNLN TSLSIYTIPG HQNITDDDSN SNSISDATTI TDEIPAFVSH 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MQLHLFSATP LSLSGKGKED EIKKKKGSPP CIELSLGYGS SSHVVEEDGK DDKSSNSVFT  60
EAQFQELQLQ AVIFKYLVSG LPVPFHLFFI IWNSVSSSLG DGGIYKLYPT LGRFDYTSMT  120
DPEPGRCRRT DGKKWRCKRD VIPGQKYCGQ HVHRGRRSRK PVEASEHVMR SDDTNIISKI  180
TKLYASGDDP GSKCAPASSK TSCLSSTSRT NQYNSIEDSS AKPRFINSGY GSEKQDTYMI  240
CKRKDITTSV RTPSFIAGDN ADSKNIDFNR ISPSKTNQKQ NCGEARKHGA LVPILGLSTK  300
SDQQHTIGSE SDEQRCRRSD GKKWRCSKTV VPCQKYCETH MHRGANRKRV ASVSVVVPPS  360
KSPSYRFCPP ENDGTRRNLN TSLSIYTIPG HQNITDDDSN SNSISDATTI TDEIPAFVSH  420
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g091540.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217915	0.0	Solanum lycopersicum chromosome 1 clone C01SLm0026F20, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010325825.1	0.0	growth-regulating factor 9
TrEMBL	M1AYU1	0.0	M1AYU1_SOLTU; Uncharacterized protein
STRING	Solyc01g091540.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7798	19	22
Representative plant	OGRP460	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	1e-27	growth-regulating factor 3

Link Out ? help Back to Top
Phytozome	Solyc01g091540.1.1
Entrez Gene	104649060

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]