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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g090790.2.1 | ||||||||
Common Name | LOC101268226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 50614.6 Da PI: 7.079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.1 | 1e-15 | 288 | 333 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Solyc01g090790.2.1 288 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 333 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-19 | 281 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.815 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.91E-17 | 288 | 337 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-18 | 288 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-13 | 288 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-18 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MNQCVPSWDL DDSTVPRKNL IQTQSNSLAV DVPSLDYEVA ELTWENGQLA MHGLGPPRAN 60 NKPISSYGGT LESIVNQATR CNDDVPLHLH GKSTVDRNKQ SGDEVVPWFN NHNAVAYAPP 120 ATGLVAMTKD ALVPCSRNTS NSDNQRSVHV PGIDGSTHVG SCSGATNSRD WTVAPRMRVR 180 PTRREWSSRA DMISVSGSET CGGDSRQLTV DTFDREFGTT MYTSTSMGSP ENTSSDKQCT 240 NRTGDDHDSV CHSRDQKEGG DDEDDNDNKK GSKNSSSSTK RKRAAAIHNQ SERKRRDKIN 300 QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVHMMS RMNMSPAMML PLAMQQQLQM 360 SMMGMGMGMG MGMGVAGVFD INNLSRPNIP GLPSFLHPSA AFMQPITSWD NSNSAPSPPS 420 AAMPDPLAAL LACQSQPINM DAYSRMAALY LQFQQPPTGS GPKN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 280 | 295 | RKRAAAIHNQSERKRR |
2 | 291 | 296 | ERKRRD |
3 | 292 | 297 | RKRRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10055 | 0.0 | leaf| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g090790.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244515 | 1e-11 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27m10 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229781.1 | 0.0 | transcription factor UNE10 | ||||
TrEMBL | A0A3Q7EJW5 | 0.0 | A0A3Q7EJW5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g090790.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4367 | 21 | 32 | Representative plant | OGRP8003 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g090790.2.1 |
Entrez Gene | 101268226 |
Publications ? help Back to Top | |||
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