PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 275aa MW: 30485.6 Da PI: 6.5905

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g090560.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.9	5.3e-18	99	148	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g Solyc01g090560.2.1 99 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 148 69**887.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.551	99	156	IPR001471	AP2/ERF domain
SMART	SM00380	8.2E-36	99	162	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-21	99	157	IPR016177	DNA-binding domain
Pfam	PF00847	6.9E-13	99	148	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.5E-32	99	157	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	100	111	IPR001471	AP2/ERF domain
CDD	cd00018	8.68E-33	100	158	No hit	No description
PRINTS	PR00367	1.4E-10	122	138	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEDHNEFSIS SSTNSTTSSF TSCCSNNNCL CSTSTTTCST SSTSSNNCLH ESIAKTSSND 60 HYKCKSKKSA KKNQDGNEEE DNTKIRRKKQ CVVDEKHPTY RGVRKRNWGK WVSEIRQPRK 120 KSRIWLGTYP TAEMAARAHD VAALAIKGDS AYLNFPHLAD QLPRPASASP KDIQAAAAKA 180 AAASIFLEEN SVESSQLTGL HSSHSSTNLA SDNVQELLNS PSMDHDDPFF DLPDLIIDRL 240 DQNDRYQYPV STWQLAGADS GMFRLDEPFL WECY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-19	93	157	8	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00312	DAP	Transfer from AT2G44940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g090560.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239649	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-202l21 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229764.1	0.0	ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	5e-58	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A3Q7F421	0.0	A0A3Q7F421_SOLLC; Uncharacterized protein
STRING	Solyc01g090560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	4e-51	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc01g090560.2.1
Entrez Gene	101263056

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]