PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 320aa MW: 36330.3 Da PI: 6.9313

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g090530.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.7e-14	6	51	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd+ l++ vk++G+++W++I ++ + Rt+k+c++rw + Solyc01g090530.1.1 6 KGPWKEEEDQVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 51 79***********************8887799********87 PP
2	Myb_DNA-binding	46.4	8.9e-15	62	101	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia +m+ gRt++++k++w Solyc01g090530.1.1 62 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 101 79****************.*****.********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.9	1	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-21	3	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-28	4	101	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-12	5	55	IPR001005	SANT/Myb domain
CDD	cd00167	7.09E-12	8	53	No hit	No description
Pfam	PF13921	1.5E-12	9	59	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-18	55	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.003	58	109	IPR017930	Myb domain
SMART	SM00717	4.9E-13	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-13	62	101	IPR001005	SANT/Myb domain
CDD	cd00167	8.87E-11	62	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSEIKKGPWK EEEDQVLIKH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG 60 VKFSAEEERT VIELQAQFGN KWARIATYMP GRTDNDVKNF WSSRQKRLAK ILRNSVPQPS 120 KPQKNISKEA PDLLKAPSVE EPKLNSSADE RALVVSQHCS SSYTNNFDTI NMVPLPELVN 180 STSLPFDQEL PPLEFTPSEK KICIWPQFPL PFPHIPVQTN FGQPLEHQEL PMKLEDSDFL 240 DYFGQLSASD LGGNVQVPLA PSCSSGQDQR SSEIGVKREM AEIGVKREME YPLTPDSFIN 300 DFPLDMFDYI DPLQSPSGW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-29	3	107	24	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g090530.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231152.1	0.0	transcription factor DUO1
TrEMBL	A0A3Q7F417	0.0	A0A3Q7F417_SOLLC; Uncharacterized protein
STRING	Solyc01g090530.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4207	23	42
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	7e-76	MYB family protein

Link Out ? help Back to Top
Phytozome	Solyc01g090530.1.1
Entrez Gene	101251043

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]