PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g090320.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 187aa    MW: 21442.4 Da    PI: 10.4959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g090320.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.6e-1788138255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y GVr++  +g + AeIrdp   + k +r +lg++ t+e+Aa a+++a+ k++g
  Solyc01g090320.2.1  88 RYIGVRRRQ-WGTFTAEIRDP---NkKGARLWLGTYETPEDAALAYDQAAFKIRG 138
                         699***887.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.33E-2888148No hitNo description
PfamPF008478.5E-1288138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3088147IPR001471AP2/ERF domain
SMARTSM003802.4E-3288152IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2188147IPR016177DNA-binding domain
PROSITE profilePS5103222.41888146IPR001471AP2/ERF domain
PRINTSPR003673.0E-1089100IPR001471AP2/ERF domain
PRINTSPR003673.0E-10128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNINMKFSLS DFDFLESVKQ HLLNDFDFFK YFSPMNLNNV ELPNSAISSL GSSLSIESHE  60
KFEYEEEIIK GPNMVVARQK NTPEDWRRYI GVRRRQWGTF TAEIRDPNKK GARLWLGTYE  120
TPEDAALAYD QAAFKIRGSR ARVNFPHLIG SNMPKPARLK VRHHTSSLKP SSFSSTSLKN  180
GIRKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2589152669ATERF1
3gcc_A2e-2589152669ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g090320.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071299.21e-137ethylene-responsive transcription factor 2-like
TrEMBLA0A3Q7F3Y11e-136A0A3Q7F3Y1_SOLLC; Uncharacterized protein
STRINGSolyc01g090320.2.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-34ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]