PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 353aa MW: 39181.6 Da PI: 6.1816

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g087130.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + G g+W+ Iar g+ R++k+c++rw +yl Solyc01g087130.2.1 27 KGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74 678*******************************************97 PP
2	Myb_DNA-binding	49.9	7.2e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+el+v+++ lG++ W+ Ia++++ gRt++++k++w++ Solyc01g087130.2.1 80 RGAFSLQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 123 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.552	22	74	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-28	25	121	IPR009057	Homeodomain-like
SMART	SM00717	7.8E-11	26	76	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-14	27	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-23	28	81	IPR009057	Homeodomain-like
CDD	cd00167	1.30E-9	30	74	No hit	No description
PROSITE profile	PS51294	24.369	75	129	IPR017930	Myb domain
SMART	SM00717	5.9E-15	79	127	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-14	80	123	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-24	82	128	IPR009057	Homeodomain-like
CDD	cd00167	1.05E-10	82	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ 60 RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN RWSQIAARLP GRTDNEIKNF 120 WNSTIKKRSK NNNNSTPSPN TSDSSIGGIF PMQGHDVNNV MATLCMDNSS STTSGSSMQA 180 MVPFNPFPQL DSTSYDISGL VGPVNLGQFG CSGGDGGFLD YGVVETYSMM GLGSDEFSIP 240 SLEGVHNKST TTMGESNNNS NVDFSSNNIV SGANDYDSMI EKKNNTNVNN NNNQHLMNMS 300 GISDQSLKVE DYMVGFGNHH HWHGESLRIG EFDWEGLLAN VSSLPYLDFQ VE*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ  60
RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN RWSQIAARLP GRTDNEIKNF  120
WNSTIKKRSK NNNNSTPSPN TSDSSIGGIF PMQGHDVNNV MATLCMDNSS STTSGSSMQA  180
MVPFNPFPQL DSTSYDISGL VGPVNLGQFG CSGGDGGFLD YGVVETYSMM GLGSDEFSIP  240
SLEGVHNKST TTMGESNNNS NVDFSSNNIV SGANDYDSMI EKKNNTNVNN NNNQHLMNMS  300
GISDQSLKVE DYMVGFGNHH HWHGESLRIG EFDWEGLLAN VSSLPYLDFQ VE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-27	25	128	5	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g087130.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239577	2e-09	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-247j1 map 10, complete sequence
GenBank	X95296	2e-09	L.esculentum mRNA for THM27 protein

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229624.1	0.0	transcription factor MYB46-like
TrEMBL	M1A9C0	0.0	M1A9C0_SOLTU; Uncharacterized protein
STRING	Solyc01g087130.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	4e-62	myb domain protein 46

Link Out ? help Back to Top
Phytozome	Solyc01g087130.2.1
Entrez Gene	101245096

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]