PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g081630.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 314aa MW: 34535.4 Da PI: 8.7997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g081630.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	273	292	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L+ H++++ Solyc01g081630.2.1 273 CSQCGKPF-KPEKLHAHMKSC 292 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	1.4E-20	1	166	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MPESFAWSYK RKYKTGYVWQ DLLDEDLITP VSDNEYVLKG SEIPSITIIK DVSSGEKEVT 60 KEQTKEEAQD QVFLMDSSKK ISSEIEEDSQ NICSETSTLT TNSPKFEEEE EKKIGNNSSF 120 SSNSSSSISS FGSMKTKKKT EDSEEKTETS QNNEKTSKNP KLNKSRSYSN GASSIFRNLI 180 TCGAVDTNDS GIIPLKKNKT AAAGEKTVSF SSEICKADKI GGSQRIFGTA WNQQQTNARK 240 SCDGAFSMSK NKSEFGSRRS VSANYKPING PNCSQCGKPF KPEKLHAHMK SCKGMKAAAT 300 HKTYKDAPKI DSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g081630.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323476.1	0.0	protein UPSTREAM OF FLC isoform X1
Refseq	XP_019070945.1	0.0	protein UPSTREAM OF FLC isoform X2
TrEMBL	A0A3Q7EIN1	0.0	A0A3Q7EIN1_SOLLC; Uncharacterized protein
STRING	Solyc01g081630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15
Representative plant	OGRP8665	3	5

Link Out ? help Back to Top
Phytozome	Solyc01g081630.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]