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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g080670.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 761aa MW: 85342.2 Da PI: 6.4648 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.8 | 2.4e-36 | 126 | 203 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++Cead+se+k yh+rh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ Solyc01g080670.2.1 126 RCQVPDCEADISELKGYHKRHRVCLRCANATSVVLDGHSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 203 6*************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-27 | 123 | 188 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.376 | 124 | 201 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-33 | 125 | 205 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.1E-27 | 127 | 201 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MISSLLSGDD PAASSNFDWS DLLDFDLHEQ LNISFDDPLH QEQQPETEFV APVIPSSEDS 60 PHSQDTDAGR IRKRDPRMAC SNFLAGRIPC ACPELDEKME EEEMAGIGPG KKRARTVRAS 120 AGAGARCQVP DCEADISELK GYHKRHRVCL RCANATSVVL DGHSKRYCQQ CGKFHILSDF 180 DEGKRSCRRK LERHNNRRRR KATDTSKTSA EKESQQLTTA DDVSGDDDIV KDNTCMGSQL 240 GEKEILLESE GHVPICSTQG IQNNHSDSFT ASGETQVDAE KENYKNSHSP SYYDNKSALS 300 SVCPTGRISF KLYDWNPAEF PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TVFVAMPTFK 360 WGKLLEDPAA HLYELIASPG NMLRGRGSFL IYLNNMVFRV TKGENSVVKV KLKGPAPKLM 420 SIYPTCFEAG KPMEFFACGS NLMQPRFRFL VSFGGRYLGN DINVVPSDCK YEGDSSSTEH 480 QLLKIHVPRT EADLFGPAFV EVENESGLSN FIPILIAEKD ICAEMKEIQR KFCSGGSECT 540 AVCSPCEAST SRKSEFSEFM LDVAWLLREP SSENVQILAS VQMQRFNYLL NILMESQSTI 600 ILERVLSYFE NIVKRNMLAG ITDADMTLFQ KNILEKNILL KERLHLKEYF AGDSGQIMQE 660 LPNLQDTAVP HKHNIEFGPT YWELTSRVPL LDAELPLRVK EQQSGKSCGF LVRKTLLTSR 720 TLVFVISGFA LCLGLCATFL HPRKVGDIAM TIRRCLFDKT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 4e-43 | 122 | 206 | 1 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 199 | RRKLERHNNRRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16836 | 0.0 | flower| fruit| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g080670.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010323003.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X2 | ||||
TrEMBL | A0A3Q7EHP4 | 0.0 | A0A3Q7EHP4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g080670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5407 | 24 | 33 | Representative plant | OGRP4828 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g080670.2.1 |
Publications ? help Back to Top | |||
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