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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc01g079870.2.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NF-YC |
| Protein Properties |
Length: 259aa MW: 28475.3 Da PI: 6.149 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g079870.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 176.6 | 2.4e-55 | 80 | 183 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdi
Solyc01g079870.2.1 80 QLQTFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDI 170
89******99999****************************************************************************** PP
NF-YC 89 fdflvdivprdel 101
fdflvdivpr++l
Solyc01g079870.2.1 171 FDFLVDIVPREDL 183
**********987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MDQHGNGQPP GIGVVTSSAP IYGAPYQANQ MAGPSPPAVS AGAIQSPQAA GLAASSAQMA 60
QHQLAYQHIH QQQQQQLQQQ LQTFWANQYQ EIEHVTDFKN HSLPLARIKK IMKADEDVRM 120
ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180
EDLKDEVLAT IPRGTLPVGG PTEGLPFYYG MPPQSAQPIG APGMYMGKPV DQALYAQQPR 240
PYMAQPIWPQ QQQPPSDS*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Les.3410 | 0.0 | callus| cell culture| flower| fruit| leaf| root| stem| trichome |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC246645 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-49l1 map 1, complete sequence |
| GenBank | BT012948 | 0.0 | Lycopersicon esculentum clone 114117R, mRNA sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ben-Naim O, et al.
The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA.
Plant J., 2006. 46(3): p. 462-76
[PMID:16623906] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Gnesutta N, et al.
CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
Plant Cell, 2017. 29(6): p. 1516-1532
[PMID:28526714] - Bi C,Ma Y,Wang XF,Zhang DP
Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
Plant Mol. Biol., 2017. 95(4-5): p. 425-439
[PMID:28924726] - Liu X, et al.
Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
Plant Physiol., 2018. 177(1): p. 105-114
[PMID:29599268]
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