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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc01g079620.2.1 |
| Common Name | myb12, MYB12 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 339aa MW: 38567.4 Da PI: 4.7253 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g079620.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWT+eEd++l +++ G g+W++ ++ g+ R++k+c++rw +yl
Solyc01g079620.2.1 14 RGRWTAEEDQILTNYIISNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
8*******************************99************97 PP
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| 2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T +E+++++++++ lG++ W++Ia+++ gRt++++k++w+++l
Solyc01g079620.2.1 67 RGNITSQEEDIIIKLHATLGNR-WSLIAEHLS-GRTDNEIKNYWNSHL 112
7999******************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MGRTPCCEKV GIKRGRWTAE EDQILTNYII SNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60
LRSDLKRGNI TSQEEDIIIK LHATLGNRWS LIAEHLSGRT DNEIKNYWNS HLSRKVDSLR 120
IPSDEKLPKA VVDLAKKGIP KPIKKSSISR PKNKKSNLLE KEALCCTNMP ACDSAMELMQ 180
EDLAKIEVPN SWAGPIEAKG SLSSDSDIEW PRLEEIMPDV VIDDEDKNTN FILNCFREEV 240
TSNNVGNSYS CIEEGNKKIS SDDEKIKLLM DWQDNDELVW PTLPWELETD IVPSWPQWDD 300
TDTNLLQNCT NDNNNYEEAT TMEINNQNHS TIVSWLLS*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 135 | 144 | KKGIPKPIKK |
| Function -- GeneRIF ? help
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- These experiments demonstrate that the MYB12 transcription factor plays an important role in regulating the flavonoid pathway in tomato fruit; the SLMYB12 mutation may be a candidate for the y mutation.
[PMID: 19906891] - MYB12 role in flavonol metabolism and fruit color
[PMID: 27208285] - The authors suggest that SlMYB12 plays a positive role in the flavonol biosynthesis pathway in cherry tomatoes.[SlMYB12]
[PMID: 29371612]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU419748 | 0.0 | Solanum lycopersicum MYB12 (MYB12) mRNA, complete cds |
| GenBank | FN555126 | 0.0 | Solanum lycopersicum mRNA for Myb 12 transcription factor (myb12 gene), cultivar Moneyberg |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Luo J, et al.
AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol.
Plant J., 2008. 56(2): p. 316-26
[PMID:18643978] - Ballester AR, et al.
Biochemical and molecular analysis of pink tomatoes: deregulated expression of the gene encoding transcription factor SlMYB12 leads to pink tomato fruit color.
Plant Physiol., 2010. 152(1): p. 71-84
[PMID:19906891] - Fernandez-Moreno JP, et al.
Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor.
Plant Physiol., 2016. 171(3): p. 1821-36
[PMID:27208285] - Wang S, et al.
SlMYB12 Regulates Flavonol Synthesis in Three Different Cherry Tomato Varieties.
Sci Rep, 2018. 8(1): p. 1582
[PMID:29371612]
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