PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g073950.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 753aa MW: 84786.6 Da PI: 10.2121 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1e-10 | 17 | 67 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W+t+E++ll+ avk++G ++W+++a +++ +t+ ck+++++++ Solyc01g073950.2.1 17 WSTWEELLLASAVKRHGLKDWESVAMELQnrislpALLTAQICKEKYRDLR 67 *****************************9999998899999****99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.771 | 9 | 67 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-6 | 11 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-6 | 11 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-6 | 13 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-6 | 17 | 66 | No hit | No description |
Pfam | PF00249 | 6.4E-9 | 17 | 66 | IPR001005 | SANT/Myb domain |
SMART | SM00297 | 1.9E-16 | 302 | 411 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 3.2E-16 | 311 | 413 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.02E-17 | 312 | 408 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.68E-14 | 313 | 406 | No hit | No description |
Pfam | PF00439 | 2.3E-10 | 317 | 396 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.94 | 321 | 392 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MEKDSAAATT TTKKTIWSTW EELLLASAVK RHGLKDWESV AMELQNRISL PALLTAQICK 60 EKYRDLRRRF MNSYNNSYDE KIIEQDVDGN GDVTIPWIEE LRKLRVAELQ QEVQRYDLSI 120 QSLELKVKKM EEEREQSLKA QSLDDGQKPD LEDVKEERSQ NDKNSGADVK PEDSTGKPVS 180 SEESDRENRS FNESNSTENR ETGVKNEPEP VEIGEDKPVQ EIKPVSEEDS YNDSSSDRQE 240 EKKARRDSGD LRDTVSGSKE ETRENSDVQS TATLTKRKRQ RGGDGGRSGG DAAEMGSPAV 300 GIKREGAAKS EPLIEFLDVI RSHKRGSVFK RRLDSQKTDK YKSMIRQHMD LETVQARIDD 360 GSYCSCPSKF YLDLLLIFNN AIVYFAKSSS ETTAANELRG IVMEELKRAR TQSKDLSPFK 420 IQPKPELERS DSLLAKHKST VPIVVCRKRS SISAKAAASS GTNKTEKPAD SKPPLNPKPP 480 AVKSSSNEEE SSIKLGVKEK PVTGVRSMRR SSKGRSNNNN ASQSNSNQNT NAKQSNSSGE 540 KKEEVKPEKK KEEGKKRGAA ADFLKRIKKN SPTKGTLVEA LKNNPPEEVV VVKGKNSKDQ 600 QKKKVDERRE APVRRSGGGG GGSGASKDEG SPSKRSVGRP PKRGGREVVV QEKRGRENSE 660 KDDSTKRPKK RSRRRNKRKK LKRKKILSEH VCMELLIFYI PVLFFFQLKK YTIHNIFLRS 720 IIIIHLYLVP NIAIIDFLDY IFQDTVFIIL KK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 280 | KRKRQR |
2 | 665 | 680 | KRPKKRSRRRNKRKKL |
3 | 667 | 684 | PKKRSRRRNKRKKLKRKK |
4 | 668 | 684 | KKRSRRRNKRKKLKRKK |
5 | 669 | 677 | KRSRRRNKR |
6 | 672 | 678 | RRRNKRK |
7 | 672 | 684 | RRRNKRKKLKRKK |
8 | 673 | 680 | RRNKRKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g073950.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC245333 | 2e-08 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-40e1 map 10, complete sequence | |||
GenBank | AC245350 | 2e-08 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35c14 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229352.1 | 0.0 | ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 | ||||
TrEMBL | A0A3Q7EH34 | 0.0 | A0A3Q7EH34_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g073950.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4268 | 21 | 36 | Representative plant | OGRP3805 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57980.1 | 1e-59 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g073950.2.1 |
Publications ? help Back to Top | |||
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