PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 322aa MW: 36162.5 Da PI: 4.9921

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g067540.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.3e-18	56	104	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Solyc01g067540.1.1 56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104 66****.******965...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.7E-32	55	118	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.613	55	112	IPR001471	AP2/ERF domain
CDD	cd00018	2.57E-28	55	111	No hit	No description
PRINTS	PR00367	1.1E-7	56	67	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-27	56	111	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.58E-20	56	112	IPR016177	DNA-binding domain
Pfam	PF00847	3.3E-11	58	104	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-7	78	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010102	Biological Process	lateral root morphogenesis
GO:0010432	Biological Process	bract development
GO:0010451	Biological Process	floral meristem growth
GO:0010582	Biological Process	floral meristem determinacy
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MSSSNSTPIS SDNQLPFGMF EPIRTPTGYS WLQRNTALCQ PSEKRGRRKQ TEPGRFLGVR 60 RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTSDSANT 120 NFPSLISPFE HVQNMLNPNN THFNFNTHIN KNTKTKTTTT TNSDESSSYG SSPNENNSFV 180 FLNDDMNNNN NNNTNSGYLL DCIVPDSCLK PPPQQPQEPS STPQSKMNGE IENTYYDTNG 240 FFDMSSSWES SCELSAMTMN HSSNNMNHQM MDDVADGSYY YPNMEINNYD HLMMMPNHET 300 TNAAAAAAAF GDVEFGYTTL F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-20	46	111	5	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00520	DAP	Transfer from AT5G18560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g067540.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243712	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229302.3	0.0	ethylene-responsive transcription factor ERF086
TrEMBL	A0A3Q7EZV2	0.0	A0A3Q7EZV2_SOLLC; Uncharacterized protein
STRING	Solyc01g067540.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9307	21	25
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	7e-49	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc01g067540.1.1
Entrez Gene	101249486

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]