PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 301aa MW: 33023.4 Da PI: 5.0409

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g066730.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.2	1e-13	11	58	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i +s r+v fskRr+g++KKA L ++a+va+++fss+gk y+ Solyc01g066730.2.1 11 KKITKESARKVAFSKRRKGLFKKAVQLESKTGAKVAILVFSSSGKPYT 58 678999**************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.413	3	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.2E-17	3	62	IPR002100	Transcription factor, MADS-box
CDD	cd00120	9.56E-21	4	58	No hit	No description
SuperFamily	SSF55455	5.76E-18	4	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-11	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-18	12	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-11	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-11	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGKGKQKIEI KKITKESARK VAFSKRRKGL FKKAVQLESK TGAKVAILVF SSSGKPYTCG 60 DVETLCGISD SFNLQTHSES NSIWDSFNLQ THSESNGIWD SFNLERPCES NGMWDSFNII 120 EGPCSSSGKN GMWDSFNLER PCSSSGQSGM WDSFNLGRPC ESNGMWDSFN IIEGPCSSSG 180 QNGMWDSFNL ERPCSSSGQS GMWDSFNLER HCSSSGIPSG SNGIWDSFNV ETHCSSSESC 240 GMSDSFNVET HCSSSGQSGT WDSFNVEACH NVNELLLLKA HLESTREKLL ESQFLDSLWS 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g066730.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245944	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-17e7 map 1, complete sequence
GenBank	AC246647	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-49k13 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886320.1	0.0	agamous-like MADS-box protein AGL97
TrEMBL	A0A3Q7EFH4	0.0	A0A3Q7EFH4_SOLLC; Uncharacterized protein
STRING	Solyc01g066730.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18465	4	4
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17310.1	1e-09	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Solyc01g066730.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]